Hb_001671_100

Information

Type -
Description -
Location Contig1671: 95048-100278
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23550g
description POPTRDRAFT_725079; glycine-rich RNA-binding family protein
nr
ID XP_002315330.1
description glycine-rich RNA-binding family protein [Populus trichocarpa]
swissprot
ID O22703
description Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1
trembl
ID B9HUL0
description Glycine-rich RNA-binding family protein OS=Populus trichocarpa GN=POPTR_0010s23550g PE=4 SV=1
Gene Ontology
ID GO:0005730
description glycine-rich rna-binding protein rz1c-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15431: 95183-98394 , PASA_asmbl_15432: 95065-100188 , PASA_asmbl_15433: 98561-99150
cDNA
(Sanger)
(ID:Location)		 025_M10.ab1: 95116-99858 , 049_N23.ab1: 95116-99457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_100 0.0 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
2 Hb_007416_120 0.0391040995 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
3 Hb_001876_050 0.0488870876 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
4 Hb_001999_310 0.0489231623 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
5 Hb_002232_360 0.0595598423 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
6 Hb_000392_430 0.0624558463 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
7 Hb_001314_050 0.0644907871 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
8 Hb_029243_030 0.065340423 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
9 Hb_027073_020 0.0696308693 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
10 Hb_000749_190 0.0707055745 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
11 Hb_002456_010 0.0709004799 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
12 Hb_000111_290 0.0713229798 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
13 Hb_000406_200 0.0719971799 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
14 Hb_003465_030 0.0736706016 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000181_400 0.073768525 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
16 Hb_001301_150 0.0740997908 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
17 Hb_003913_070 0.0741446303 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
18 Hb_006831_140 0.0745786828 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_000078_120 0.0746985774 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
20 Hb_023001_040 0.075088166 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001671_100 Hb_001671_100 Hb_007416_120 Hb_007416_120 Hb_001671_100--Hb_007416_120 Hb_001876_050 Hb_001876_050 Hb_001671_100--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_001671_100--Hb_001999_310 Hb_002232_360 Hb_002232_360 Hb_001671_100--Hb_002232_360 Hb_000392_430 Hb_000392_430 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050 Hb_007416_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_007416_120--Hb_004324_130 Hb_007416_120--Hb_001999_310 Hb_000181_400 Hb_000181_400 Hb_007416_120--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_007416_120--Hb_000111_290 Hb_001876_050--Hb_004324_130 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_000363_190 Hb_000363_190 Hb_002232_360--Hb_000363_190 Hb_002232_360--Hb_001999_310 Hb_002232_360--Hb_029243_030 Hb_002232_360--Hb_000392_430 Hb_001828_180 Hb_001828_180 Hb_002232_360--Hb_001828_180 Hb_000111_320 Hb_000111_320 Hb_000392_430--Hb_000111_320 Hb_000392_430--Hb_001314_050 Hb_002811_180 Hb_002811_180 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000466_140 Hb_000466_140 Hb_000392_430--Hb_000466_140 Hb_001314_050--Hb_000111_320 Hb_031862_100 Hb_031862_100 Hb_001314_050--Hb_031862_100 Hb_005914_170 Hb_005914_170 Hb_001314_050--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_001314_050--Hb_001189_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2999 24.0893 21.4845 27.3077 21.5844 24.7058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4963 35.4062 25.4189 45.9032 30.9425

CAGE analysis