Hb_001673_010

Information

Type -
Description -
Location Contig1673: 23682-30387
Sequence    

Annotation

kegg
ID rcu:RCOM_0422030
description hypothetical protein
nr
ID XP_012074275.1
description PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08727 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15440: 23724-24656 , PASA_asmbl_15441: 25109-30470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001673_010 0.0 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
2 Hb_071736_010 0.1035655469 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
3 Hb_000649_050 0.1134997874 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
4 Hb_001855_010 0.119284279 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
5 Hb_005883_050 0.1196743687 - - PREDICTED: transportin-3 [Jatropha curcas]
6 Hb_003641_050 0.1206096019 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
7 Hb_000023_140 0.1208088974 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
8 Hb_005754_060 0.1228397771 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001124_080 0.1240123561 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
10 Hb_000284_110 0.1285405105 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
11 Hb_012286_050 0.1304331482 - - PREDICTED: syntaxin-61 [Jatropha curcas]
12 Hb_003363_010 0.1317433299 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013405_040 0.1337739134 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005280_010 0.1345323571 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
15 Hb_000679_150 0.1347414774 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
16 Hb_001100_050 0.1358400495 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
17 Hb_000922_330 0.135939156 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
18 Hb_002616_050 0.1368059261 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
19 Hb_001266_080 0.1368410288 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
20 Hb_006816_390 0.1368915167 - - protein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001673_010 Hb_001673_010 Hb_071736_010 Hb_071736_010 Hb_001673_010--Hb_071736_010 Hb_000649_050 Hb_000649_050 Hb_001673_010--Hb_000649_050 Hb_001855_010 Hb_001855_010 Hb_001673_010--Hb_001855_010 Hb_005883_050 Hb_005883_050 Hb_001673_010--Hb_005883_050 Hb_003641_050 Hb_003641_050 Hb_001673_010--Hb_003641_050 Hb_000023_140 Hb_000023_140 Hb_001673_010--Hb_000023_140 Hb_071736_010--Hb_005883_050 Hb_005754_060 Hb_005754_060 Hb_071736_010--Hb_005754_060 Hb_071736_010--Hb_000023_140 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_002616_050 Hb_002616_050 Hb_071736_010--Hb_002616_050 Hb_071736_010--Hb_001855_010 Hb_000649_050--Hb_003641_050 Hb_000922_330 Hb_000922_330 Hb_000649_050--Hb_000922_330 Hb_002681_050 Hb_002681_050 Hb_000649_050--Hb_002681_050 Hb_001100_050 Hb_001100_050 Hb_000649_050--Hb_001100_050 Hb_003376_050 Hb_003376_050 Hb_000649_050--Hb_003376_050 Hb_007477_080 Hb_007477_080 Hb_000649_050--Hb_007477_080 Hb_001135_160 Hb_001135_160 Hb_001855_010--Hb_001135_160 Hb_001855_010--Hb_000023_140 Hb_014568_030 Hb_014568_030 Hb_001855_010--Hb_014568_030 Hb_005063_040 Hb_005063_040 Hb_001855_010--Hb_005063_040 Hb_001855_010--Hb_005754_060 Hb_000120_500 Hb_000120_500 Hb_005883_050--Hb_000120_500 Hb_003434_060 Hb_003434_060 Hb_005883_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_005883_050--Hb_000390_060 Hb_005883_050--Hb_005754_060 Hb_004447_060 Hb_004447_060 Hb_005883_050--Hb_004447_060 Hb_003641_050--Hb_000922_330 Hb_000481_040 Hb_000481_040 Hb_003641_050--Hb_000481_040 Hb_005662_030 Hb_005662_030 Hb_003641_050--Hb_005662_030 Hb_003641_050--Hb_007477_080 Hb_003641_050--Hb_001100_050 Hb_000023_140--Hb_002616_050 Hb_000023_140--Hb_005754_060 Hb_000023_140--Hb_005063_040 Hb_006788_070 Hb_006788_070 Hb_000023_140--Hb_006788_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0524 3.52304 7.34359 10.2437 14.0018 45.8607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2722 13.3119 22.2696 5.64453 13.7827

CAGE analysis