Hb_001673_030

Information

Type -
Description -
Location Contig1673: 49845-55333
Sequence    

Annotation

kegg
ID tcc:TCM_023088
description Ribosomal protein L22p/L17e family protein
nr
ID KDP36085.1
description hypothetical protein JCGZ_08729 [Jatropha curcas]
swissprot
ID Q89J89
description 50S ribosomal protein L22 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=rplV PE=3 SV=1
trembl
ID A0A067KUY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08729 PE=3 SV=1
Gene Ontology
ID GO:0015934
description ribosomal protein l22p l17e family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15442: 47329-50844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001673_030 0.0 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
2 Hb_020549_010 0.2317550681 - - PREDICTED: uncharacterized protein LOC105638664 isoform X2 [Jatropha curcas]
3 Hb_001676_030 0.2625462119 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000071_200 0.2636229675 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
5 Hb_000270_860 0.267512382 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005539_300 0.2757594443 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
7 Hb_000792_080 0.2864519666 - - hypothetical protein B456_012G111300, partial [Gossypium raimondii]
8 Hb_001589_070 0.2864873499 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_000982_150 0.293025005 transcription factor TF Family: Orphans histidine kinase 1 plant, putative [Ricinus communis]
10 Hb_023051_010 0.3048222962 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
11 Hb_000002_320 0.305091051 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
12 Hb_034667_020 0.307148125 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001217_060 0.3084245555 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_012188_010 0.3095702615 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
15 Hb_007508_040 0.315346087 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
16 Hb_002805_140 0.3167171251 - - hypothetical protein POPTR_0001s28390g [Populus trichocarpa]
17 Hb_101040_010 0.3175350491 - - -
18 Hb_087221_010 0.3201749068 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
19 Hb_164225_010 0.3245466534 - - -
20 Hb_187661_010 0.3318367883 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001673_030 Hb_001673_030 Hb_020549_010 Hb_020549_010 Hb_001673_030--Hb_020549_010 Hb_001676_030 Hb_001676_030 Hb_001673_030--Hb_001676_030 Hb_000071_200 Hb_000071_200 Hb_001673_030--Hb_000071_200 Hb_000270_860 Hb_000270_860 Hb_001673_030--Hb_000270_860 Hb_005539_300 Hb_005539_300 Hb_001673_030--Hb_005539_300 Hb_000792_080 Hb_000792_080 Hb_001673_030--Hb_000792_080 Hb_000982_150 Hb_000982_150 Hb_020549_010--Hb_000982_150 Hb_001277_410 Hb_001277_410 Hb_020549_010--Hb_001277_410 Hb_087221_010 Hb_087221_010 Hb_020549_010--Hb_087221_010 Hb_013877_020 Hb_013877_020 Hb_020549_010--Hb_013877_020 Hb_001589_070 Hb_001589_070 Hb_020549_010--Hb_001589_070 Hb_101040_010 Hb_101040_010 Hb_001676_030--Hb_101040_010 Hb_005671_030 Hb_005671_030 Hb_001676_030--Hb_005671_030 Hb_001676_030--Hb_000071_200 Hb_187661_010 Hb_187661_010 Hb_001676_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_001676_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_001676_030--Hb_056305_010 Hb_001217_060 Hb_001217_060 Hb_000071_200--Hb_001217_060 Hb_012188_010 Hb_012188_010 Hb_000071_200--Hb_012188_010 Hb_032076_010 Hb_032076_010 Hb_000071_200--Hb_032076_010 Hb_000071_200--Hb_101040_010 Hb_000071_200--Hb_005539_300 Hb_059436_010 Hb_059436_010 Hb_000270_860--Hb_059436_010 Hb_000454_020 Hb_000454_020 Hb_000270_860--Hb_000454_020 Hb_000656_130 Hb_000656_130 Hb_000270_860--Hb_000656_130 Hb_142068_020 Hb_142068_020 Hb_000270_860--Hb_142068_020 Hb_001248_040 Hb_001248_040 Hb_000270_860--Hb_001248_040 Hb_005539_300--Hb_001676_030 Hb_005539_300--Hb_142068_020 Hb_005539_300--Hb_000454_020 Hb_005539_300--Hb_000656_130 Hb_005539_300--Hb_001217_060 Hb_023051_010 Hb_023051_010 Hb_000792_080--Hb_023051_010 Hb_011781_040 Hb_011781_040 Hb_000792_080--Hb_011781_040 Hb_048103_010 Hb_048103_010 Hb_000792_080--Hb_048103_010 Hb_055339_010 Hb_055339_010 Hb_000792_080--Hb_055339_010 Hb_001032_030 Hb_001032_030 Hb_000792_080--Hb_001032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.826908 0.121595 0.150234 0.0484804 0 0.453608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis