Hb_001673_120

Information

Type -
Description -
Location Contig1673: 145203-148151
Sequence    

Annotation

kegg
ID rcu:RCOM_0421530
description hypothetical protein
nr
ID XP_012074289.1
description PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08737 PE=4 SV=1
Gene Ontology
ID GO:0005886
description expp1 protein precursor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15455: 145330-148033
cDNA
(Sanger)
(ID:Location)		 002_F02.ab1: 145332-147812 , 002_I21.ab1: 145330-147813 , 011_D19.ab1: 145332-147851 , 014_O02.ab1: 145334-147537 , 018_E08.ab1: 145332-147625 , 033_H03.ab1: 145332-147752 , 033_H19.ab1: 145328-147780 , 045_M12.ab1: 145332-147776

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001673_120 0.0 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
2 Hb_000028_470 0.0817042307 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
3 Hb_001140_200 0.0977674723 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
4 Hb_009404_010 0.1027365804 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
5 Hb_057183_040 0.1042913558 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
6 Hb_005754_020 0.1043776025 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
7 Hb_178968_150 0.1124407298 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000784_090 0.11293299 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
9 Hb_011930_010 0.1173541366 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
10 Hb_002740_130 0.1175278588 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
11 Hb_000625_020 0.1199481242 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000771_110 0.1216645426 - - protein phosphatase 2C [Hevea brasiliensis]
13 Hb_000258_430 0.1222533033 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_001936_050 0.122972198 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
15 Hb_001047_020 0.1242354469 - - -
16 Hb_000481_010 0.1251516324 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
17 Hb_002477_260 0.1251624728 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
18 Hb_000359_170 0.1265205938 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
19 Hb_001493_100 0.1281988096 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
20 Hb_001956_050 0.1287327729 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001673_120 Hb_001673_120 Hb_000028_470 Hb_000028_470 Hb_001673_120--Hb_000028_470 Hb_001140_200 Hb_001140_200 Hb_001673_120--Hb_001140_200 Hb_009404_010 Hb_009404_010 Hb_001673_120--Hb_009404_010 Hb_057183_040 Hb_057183_040 Hb_001673_120--Hb_057183_040 Hb_005754_020 Hb_005754_020 Hb_001673_120--Hb_005754_020 Hb_178968_150 Hb_178968_150 Hb_001673_120--Hb_178968_150 Hb_000028_470--Hb_005754_020 Hb_000028_470--Hb_178968_150 Hb_001493_100 Hb_001493_100 Hb_000028_470--Hb_001493_100 Hb_002377_040 Hb_002377_040 Hb_000028_470--Hb_002377_040 Hb_000784_090 Hb_000784_090 Hb_000028_470--Hb_000784_090 Hb_001140_200--Hb_057183_040 Hb_001823_100 Hb_001823_100 Hb_001140_200--Hb_001823_100 Hb_001936_050 Hb_001936_050 Hb_001140_200--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_001140_200--Hb_001981_070 Hb_001140_200--Hb_000028_470 Hb_001969_040 Hb_001969_040 Hb_009404_010--Hb_001969_040 Hb_004324_280 Hb_004324_280 Hb_009404_010--Hb_004324_280 Hb_000462_150 Hb_000462_150 Hb_009404_010--Hb_000462_150 Hb_005144_040 Hb_005144_040 Hb_009404_010--Hb_005144_040 Hb_002818_040 Hb_002818_040 Hb_009404_010--Hb_002818_040 Hb_005147_110 Hb_005147_110 Hb_009404_010--Hb_005147_110 Hb_008453_150 Hb_008453_150 Hb_057183_040--Hb_008453_150 Hb_057183_040--Hb_000028_470 Hb_057183_040--Hb_001823_100 Hb_000120_240 Hb_000120_240 Hb_057183_040--Hb_000120_240 Hb_003060_070 Hb_003060_070 Hb_057183_040--Hb_003060_070 Hb_002044_090 Hb_002044_090 Hb_005754_020--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_005754_020--Hb_000062_230 Hb_005754_020--Hb_002377_040 Hb_003352_050 Hb_003352_050 Hb_005754_020--Hb_003352_050 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_178968_150--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_178968_150--Hb_004813_010 Hb_178968_150--Hb_005754_020 Hb_004738_090 Hb_004738_090 Hb_178968_150--Hb_004738_090 Hb_178968_150--Hb_000784_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
589.073 104.675 63.9227 53.9857 258.383 342.368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
252.237 146.017 323.905 39.2788 26.9629

CAGE analysis