Hb_001674_010

Information

Type -
Description -
Location Contig1674: 36977-40645
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11750g
description POPTRDRAFT_835954; hypothetical protein
nr
ID XP_011018019.1
description PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
swissprot
ID Q56X72
description Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2
trembl
ID B9IME9
description Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0018s11750g PE=4 SV=2
Gene Ontology
ID GO:0005783
description reticulon-like protein b21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15489: 36871-38757 , PASA_asmbl_15490: 38044-38537 , PASA_asmbl_15491: 38868-40525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001674_010 0.0 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
2 Hb_032920_020 0.049353778 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_001095_020 0.0557576581 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
4 Hb_000028_190 0.056744331 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
5 Hb_000009_270 0.0669505622 - - Calmodulin, putative [Ricinus communis]
6 Hb_002150_090 0.0681912996 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
7 Hb_002066_110 0.0697559903 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
8 Hb_001544_090 0.0700881378 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_001080_190 0.0727222848 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
10 Hb_008054_030 0.073948522 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
11 Hb_017434_010 0.0756543338 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
12 Hb_007163_100 0.0756735287 - - BnaC03g52280D [Brassica napus]
13 Hb_001638_200 0.0764009462 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
14 Hb_002609_120 0.0769358193 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
15 Hb_001032_020 0.0796590171 - - ankyrin repeat protein [Bruguiera gymnorhiza]
16 Hb_000483_450 0.0836158983 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
17 Hb_004137_040 0.084671125 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
18 Hb_000392_110 0.0852756193 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_003339_010 0.0857893869 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
20 Hb_005976_110 0.0884155257 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]

Gene co-expression network

sample Hb_001674_010 Hb_001674_010 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_001095_020 Hb_001095_020 Hb_001674_010--Hb_001095_020 Hb_000028_190 Hb_000028_190 Hb_001674_010--Hb_000028_190 Hb_000009_270 Hb_000009_270 Hb_001674_010--Hb_000009_270 Hb_002150_090 Hb_002150_090 Hb_001674_010--Hb_002150_090 Hb_002066_110 Hb_002066_110 Hb_001674_010--Hb_002066_110 Hb_032920_020--Hb_000009_270 Hb_002609_120 Hb_002609_120 Hb_032920_020--Hb_002609_120 Hb_032920_020--Hb_000028_190 Hb_001638_200 Hb_001638_200 Hb_032920_020--Hb_001638_200 Hb_032920_020--Hb_002150_090 Hb_001095_020--Hb_002150_090 Hb_001095_020--Hb_000028_190 Hb_004435_020 Hb_004435_020 Hb_001095_020--Hb_004435_020 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130 Hb_004137_040 Hb_004137_040 Hb_000028_190--Hb_004137_040 Hb_000028_190--Hb_002150_090 Hb_000483_450 Hb_000483_450 Hb_000028_190--Hb_000483_450 Hb_008054_030 Hb_008054_030 Hb_000028_190--Hb_008054_030 Hb_000928_030 Hb_000928_030 Hb_000028_190--Hb_000928_030 Hb_000009_270--Hb_002609_120 Hb_001021_120 Hb_001021_120 Hb_000009_270--Hb_001021_120 Hb_017434_010 Hb_017434_010 Hb_000009_270--Hb_017434_010 Hb_098315_060 Hb_098315_060 Hb_000009_270--Hb_098315_060 Hb_002150_090--Hb_007163_100 Hb_002150_090--Hb_008054_030 Hb_002150_090--Hb_002066_110 Hb_002066_110--Hb_001095_020 Hb_002066_110--Hb_008054_030 Hb_003339_010 Hb_003339_010 Hb_002066_110--Hb_003339_010 Hb_000617_360 Hb_000617_360 Hb_002066_110--Hb_000617_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0891979 2.80826 25.7675 30.4336 0.111593 0.0523027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.62015 21.391

CAGE analysis