Hb_001674_040

Information

Type -
Description -
Location Contig1674: 101072-115680
Sequence    

Annotation

kegg
ID rcu:RCOM_0639420
description hypothetical protein
nr
ID XP_012071497.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
swissprot
ID Q9FPS4
description Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2
trembl
ID A0A067KRB7
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_04025 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15494: 101105-101213 , PASA_asmbl_15495: 101382-101650 , PASA_asmbl_15497: 109103-109546 , PASA_asmbl_15499: 112069-112531 , PASA_asmbl_15500: 112552-115547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001674_040 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
2 Hb_004724_370 0.0607999772 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
3 Hb_008165_030 0.0629273237 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
4 Hb_001723_140 0.0676210236 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
5 Hb_011920_020 0.069214467 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
6 Hb_001584_350 0.0715259864 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
7 Hb_010661_020 0.0727194129 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
8 Hb_000529_060 0.0756538036 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
9 Hb_000926_010 0.0758925573 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
10 Hb_010287_030 0.0760153129 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000205_130 0.0772952196 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_001231_090 0.0784541732 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
13 Hb_002903_140 0.0803917819 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
14 Hb_002811_040 0.0810191715 - - 5'->3' exoribonuclease, putative [Ricinus communis]
15 Hb_128548_010 0.0826257262 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008387_010 0.082927938 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
17 Hb_005542_050 0.0831076932 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
18 Hb_000023_320 0.0844060642 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001171_030 0.0853400806 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
20 Hb_000977_300 0.0857140207 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]

Gene co-expression network

sample Hb_001674_040 Hb_001674_040 Hb_004724_370 Hb_004724_370 Hb_001674_040--Hb_004724_370 Hb_008165_030 Hb_008165_030 Hb_001674_040--Hb_008165_030 Hb_001723_140 Hb_001723_140 Hb_001674_040--Hb_001723_140 Hb_011920_020 Hb_011920_020 Hb_001674_040--Hb_011920_020 Hb_001584_350 Hb_001584_350 Hb_001674_040--Hb_001584_350 Hb_010661_020 Hb_010661_020 Hb_001674_040--Hb_010661_020 Hb_004724_370--Hb_001723_140 Hb_010287_030 Hb_010287_030 Hb_004724_370--Hb_010287_030 Hb_004724_370--Hb_001584_350 Hb_002811_040 Hb_002811_040 Hb_004724_370--Hb_002811_040 Hb_000102_050 Hb_000102_050 Hb_004724_370--Hb_000102_050 Hb_002903_140 Hb_002903_140 Hb_008165_030--Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_008165_030--Hb_030545_030 Hb_008165_030--Hb_010287_030 Hb_096819_010 Hb_096819_010 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_155159_010 Hb_155159_010 Hb_011920_020--Hb_155159_010 Hb_001221_090 Hb_001221_090 Hb_011920_020--Hb_001221_090 Hb_011920_020--Hb_010661_020 Hb_011920_020--Hb_096819_010 Hb_002092_070 Hb_002092_070 Hb_011920_020--Hb_002092_070 Hb_001584_350--Hb_000529_060 Hb_001584_350--Hb_001171_030 Hb_000174_150 Hb_000174_150 Hb_001584_350--Hb_000174_150 Hb_128548_010 Hb_128548_010 Hb_001584_350--Hb_128548_010 Hb_000977_300 Hb_000977_300 Hb_001584_350--Hb_000977_300 Hb_005542_050 Hb_005542_050 Hb_010661_020--Hb_005542_050 Hb_000926_010 Hb_000926_010 Hb_010661_020--Hb_000926_010 Hb_002282_060 Hb_002282_060 Hb_010661_020--Hb_002282_060 Hb_010661_020--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_010661_020--Hb_001231_090 Hb_005539_040 Hb_005539_040 Hb_010661_020--Hb_005539_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4852 18.8218 17.1055 10.0929 9.0487 12.4886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7353 4.90252 4.98636 10.4396 10.1147

CAGE analysis