Hb_001675_040

Information

Type -
Description -
Location Contig1675: 34600-38844
Sequence    

Annotation

kegg
ID rcu:RCOM_1493990
description hypothetical protein
nr
ID XP_002516035.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQL6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1493990 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sulfite exporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15506: 34660-38883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004162_140 0.1061255057 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
3 Hb_003858_080 0.114926463 - - Germin-like protein 2 [Theobroma cacao]
4 Hb_002783_180 0.1155739387 - - Tubulin beta-6 chain [Gossypium arboreum]
5 Hb_006499_020 0.1357531445 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_168561_010 0.1359247633 - - PREDICTED: notchless protein homolog [Jatropha curcas]
7 Hb_003861_090 0.1373691678 - - adenylsulfate kinase, putative [Ricinus communis]
8 Hb_000254_060 0.1418163828 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000373_060 0.1534280063 - - PREDICTED: extensin-3 [Camelina sativa]
10 Hb_004667_030 0.1537913328 - - hypothetical protein VITISV_034568 [Vitis vinifera]
11 Hb_001143_210 0.1538273294 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
12 Hb_009456_010 0.1560827059 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
13 Hb_117639_010 0.1566489495 - - hypothetical protein B456_013G070100 [Gossypium raimondii]
14 Hb_001622_020 0.1582808042 - - -
15 Hb_002566_020 0.159337067 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
16 Hb_001916_030 0.1598426497 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
17 Hb_011849_020 0.1614645595 - - dioxygenase family protein [Populus trichocarpa]
18 Hb_116190_010 0.1623727374 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
19 Hb_000057_100 0.1669061427 - - Peroxidase 57 precursor, putative [Ricinus communis]
20 Hb_000186_150 0.1676571932 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001675_040 Hb_001675_040 Hb_004162_140 Hb_004162_140 Hb_001675_040--Hb_004162_140 Hb_003858_080 Hb_003858_080 Hb_001675_040--Hb_003858_080 Hb_002783_180 Hb_002783_180 Hb_001675_040--Hb_002783_180 Hb_006499_020 Hb_006499_020 Hb_001675_040--Hb_006499_020 Hb_168561_010 Hb_168561_010 Hb_001675_040--Hb_168561_010 Hb_003861_090 Hb_003861_090 Hb_001675_040--Hb_003861_090 Hb_007101_140 Hb_007101_140 Hb_004162_140--Hb_007101_140 Hb_004162_140--Hb_002783_180 Hb_000152_880 Hb_000152_880 Hb_004162_140--Hb_000152_880 Hb_000140_500 Hb_000140_500 Hb_004162_140--Hb_000140_500 Hb_004162_140--Hb_168561_010 Hb_003858_080--Hb_003861_090 Hb_001369_270 Hb_001369_270 Hb_003858_080--Hb_001369_270 Hb_003858_080--Hb_006499_020 Hb_000373_060 Hb_000373_060 Hb_003858_080--Hb_000373_060 Hb_003858_080--Hb_168561_010 Hb_002566_020 Hb_002566_020 Hb_002783_180--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_002783_180--Hb_009456_010 Hb_008304_050 Hb_008304_050 Hb_002783_180--Hb_008304_050 Hb_000389_100 Hb_000389_100 Hb_002783_180--Hb_000389_100 Hb_000186_150 Hb_000186_150 Hb_002783_180--Hb_000186_150 Hb_006499_020--Hb_168561_010 Hb_116190_010 Hb_116190_010 Hb_006499_020--Hb_116190_010 Hb_000226_110 Hb_000226_110 Hb_006499_020--Hb_000226_110 Hb_006499_020--Hb_003861_090 Hb_006499_020--Hb_000373_060 Hb_000639_010 Hb_000639_010 Hb_006499_020--Hb_000639_010 Hb_168561_010--Hb_000639_010 Hb_168561_010--Hb_116190_010 Hb_000635_100 Hb_000635_100 Hb_168561_010--Hb_000635_100 Hb_168561_010--Hb_007101_140 Hb_003861_090--Hb_000373_060 Hb_003861_090--Hb_116190_010 Hb_003861_090--Hb_000226_110 Hb_010334_050 Hb_010334_050 Hb_003861_090--Hb_010334_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0220211 0.746291 10.2237 37.7392 0 0.0107126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0250406 1.0442 0.186309 25.7966 28.3143

CAGE analysis