Hb_001675_060

Information

Type -
Description -
Location Contig1675: 50279-51228
Sequence    

Annotation

kegg
ID rcu:RCOM_1493950
description cytoplasmic dynein light chain, putative
nr
ID XP_012073370.1
description PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
swissprot
ID O02414
description Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1
trembl
ID A0A067KQK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06299 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15509: 50430-51361
cDNA
(Sanger)
(ID:Location)		 009_K12.ab1: 50430-51344 , 012_P08.ab1: 50434-51343 , 018_A04.ab1: 50430-51361 , 020_B14.ab1: 50434-51343

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_060 0.0 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
2 Hb_005016_150 0.1016247161 - - -
3 Hb_003226_170 0.1458828487 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
4 Hb_001513_020 0.157194266 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
5 Hb_000213_060 0.1614840423 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
6 Hb_001477_010 0.1734375328 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
7 Hb_000256_270 0.1770871968 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
8 Hb_002769_040 0.1780488086 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
9 Hb_003376_170 0.1806793137 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
10 Hb_000210_130 0.1808132178 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
11 Hb_001722_020 0.1812957288 - - -
12 Hb_001668_030 0.1844039004 - - conserved hypothetical protein [Ricinus communis]
13 Hb_061256_030 0.1844468512 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_002253_110 0.184903599 - - cysteine desulfurylase, putative [Ricinus communis]
15 Hb_002837_070 0.185487134 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
16 Hb_002290_060 0.1858366364 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
17 Hb_010189_010 0.1864450141 - - -
18 Hb_077219_010 0.1865096633 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011525_020 0.1884860236 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
20 Hb_174865_050 0.1892667354 - - PREDICTED: neuroguidin [Jatropha curcas]

Gene co-expression network

sample Hb_001675_060 Hb_001675_060 Hb_005016_150 Hb_005016_150 Hb_001675_060--Hb_005016_150 Hb_003226_170 Hb_003226_170 Hb_001675_060--Hb_003226_170 Hb_001513_020 Hb_001513_020 Hb_001675_060--Hb_001513_020 Hb_000213_060 Hb_000213_060 Hb_001675_060--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_001675_060--Hb_001477_010 Hb_000256_270 Hb_000256_270 Hb_001675_060--Hb_000256_270 Hb_005016_150--Hb_000213_060 Hb_005016_150--Hb_001477_010 Hb_181320_010 Hb_181320_010 Hb_005016_150--Hb_181320_010 Hb_005016_150--Hb_003226_170 Hb_005016_150--Hb_000256_270 Hb_061256_030 Hb_061256_030 Hb_003226_170--Hb_061256_030 Hb_003673_020 Hb_003673_020 Hb_003226_170--Hb_003673_020 Hb_002837_070 Hb_002837_070 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_174865_050 Hb_174865_050 Hb_003226_170--Hb_174865_050 Hb_001513_020--Hb_001477_010 Hb_001513_020--Hb_005016_150 Hb_001712_050 Hb_001712_050 Hb_001513_020--Hb_001712_050 Hb_001513_020--Hb_000256_270 Hb_001668_030 Hb_001668_030 Hb_001513_020--Hb_001668_030 Hb_010189_010 Hb_010189_010 Hb_000213_060--Hb_010189_010 Hb_113216_010 Hb_113216_010 Hb_000213_060--Hb_113216_010 Hb_000016_180 Hb_000016_180 Hb_000213_060--Hb_000016_180 Hb_000185_090 Hb_000185_090 Hb_000213_060--Hb_000185_090 Hb_000466_060 Hb_000466_060 Hb_000213_060--Hb_000466_060 Hb_002918_070 Hb_002918_070 Hb_000213_060--Hb_002918_070 Hb_001477_010--Hb_000256_270 Hb_118301_010 Hb_118301_010 Hb_001477_010--Hb_118301_010 Hb_001252_170 Hb_001252_170 Hb_001477_010--Hb_001252_170 Hb_002290_060 Hb_002290_060 Hb_001477_010--Hb_002290_060 Hb_002955_010 Hb_002955_010 Hb_001477_010--Hb_002955_010 Hb_012807_080 Hb_012807_080 Hb_001477_010--Hb_012807_080 Hb_000256_270--Hb_002955_010 Hb_000565_020 Hb_000565_020 Hb_000256_270--Hb_000565_020 Hb_023327_030 Hb_023327_030 Hb_000256_270--Hb_023327_030 Hb_000256_270--Hb_113216_010 Hb_000372_040 Hb_000372_040 Hb_000256_270--Hb_000372_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.4929 3.81091 10.8003 11.6129 149.64 275.911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.4428 28.7221 13.0328 6.15772 18.3727

CAGE analysis