Hb_001675_130

Information

Type transcription factor
Description TF Family: HB
Location Contig1675: 74260-78879
Sequence    

Annotation

kegg
ID rcu:RCOM_1493760
description homeobox protein, putative
nr
ID XP_012073376.1
description PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
swissprot
ID P46607
description Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3
trembl
ID A0A067KZK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06305 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein glabra 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15515: 75670-76999 , PASA_asmbl_15516: 77131-78313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_130 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
2 Hb_000254_150 0.1029295087 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
3 Hb_007919_030 0.1041126233 - - -
4 Hb_000684_010 0.1177250344 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_003767_010 0.1259745937 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
6 Hb_000649_280 0.1285987024 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
7 Hb_010813_030 0.1289357905 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
8 Hb_001085_230 0.1291263809 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
9 Hb_000876_050 0.1356353073 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
10 Hb_000808_220 0.1359707002 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
11 Hb_000377_160 0.1370440708 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
12 Hb_001623_470 0.1409131051 - - ammonium transporter, putative [Ricinus communis]
13 Hb_008783_020 0.1418982659 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
14 Hb_000163_250 0.1439787288 - - unnamed protein product [Vitis vinifera]
15 Hb_000120_980 0.1446277368 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
16 Hb_006316_030 0.1447766153 - - aldehyde oxidase, putative [Ricinus communis]
17 Hb_002217_200 0.1451091312 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
18 Hb_001769_030 0.1456204593 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
19 Hb_003106_210 0.1458187836 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
20 Hb_000685_040 0.1522050793 - - hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_001675_130 Hb_001675_130 Hb_000254_150 Hb_000254_150 Hb_001675_130--Hb_000254_150 Hb_007919_030 Hb_007919_030 Hb_001675_130--Hb_007919_030 Hb_000684_010 Hb_000684_010 Hb_001675_130--Hb_000684_010 Hb_003767_010 Hb_003767_010 Hb_001675_130--Hb_003767_010 Hb_000649_280 Hb_000649_280 Hb_001675_130--Hb_000649_280 Hb_010813_030 Hb_010813_030 Hb_001675_130--Hb_010813_030 Hb_006569_110 Hb_006569_110 Hb_000254_150--Hb_006569_110 Hb_018212_020 Hb_018212_020 Hb_000254_150--Hb_018212_020 Hb_000254_150--Hb_010813_030 Hb_005618_110 Hb_005618_110 Hb_000254_150--Hb_005618_110 Hb_006938_010 Hb_006938_010 Hb_000254_150--Hb_006938_010 Hb_000163_250 Hb_000163_250 Hb_007919_030--Hb_000163_250 Hb_001085_230 Hb_001085_230 Hb_007919_030--Hb_001085_230 Hb_001946_060 Hb_001946_060 Hb_007919_030--Hb_001946_060 Hb_002217_200 Hb_002217_200 Hb_007919_030--Hb_002217_200 Hb_001819_010 Hb_001819_010 Hb_007919_030--Hb_001819_010 Hb_000120_980 Hb_000120_980 Hb_000684_010--Hb_000120_980 Hb_005333_100 Hb_005333_100 Hb_000684_010--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_000684_010--Hb_000876_050 Hb_005542_110 Hb_005542_110 Hb_000684_010--Hb_005542_110 Hb_007709_010 Hb_007709_010 Hb_000684_010--Hb_007709_010 Hb_000377_160 Hb_000377_160 Hb_003767_010--Hb_000377_160 Hb_003767_010--Hb_000649_280 Hb_029866_110 Hb_029866_110 Hb_003767_010--Hb_029866_110 Hb_003767_010--Hb_002217_200 Hb_123560_050 Hb_123560_050 Hb_003767_010--Hb_123560_050 Hb_109489_010 Hb_109489_010 Hb_003767_010--Hb_109489_010 Hb_000649_280--Hb_000377_160 Hb_000563_120 Hb_000563_120 Hb_000649_280--Hb_000563_120 Hb_007420_010 Hb_007420_010 Hb_000649_280--Hb_007420_010 Hb_001907_020 Hb_001907_020 Hb_000649_280--Hb_001907_020 Hb_000649_280--Hb_123560_050 Hb_010813_030--Hb_018212_020 Hb_010813_030--Hb_000876_050 Hb_006326_030 Hb_006326_030 Hb_010813_030--Hb_006326_030 Hb_132515_010 Hb_132515_010 Hb_010813_030--Hb_132515_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.333182 24.0362 5.65426 4.40586 0.166942 0.179966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0245173 0.0468451 29.3061 13.4005

CAGE analysis