Hb_001675_170

Information

Type transcription factor
Description TF Family: CPP
Location Contig1675: 115418-120231
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18550g
description POPTRDRAFT_751807; tesmin/TSO1-like CXC domain-containing family protein
nr
ID XP_008354397.1
description PREDICTED: protein tesmin/TSO1-like CXC 5 [Malus domestica]
swissprot
ID Q9SL70
description Protein tesmin/TSO1-like CXC 6 OS=Arabidopsis thaliana GN=TCX6 PE=1 SV=1
trembl
ID M5W9V0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003211mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15520: 118467-119609 , PASA_asmbl_15521: 119640-120017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_170 0.0 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 [Malus domestica]
2 Hb_000032_250 0.1559261162 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
3 Hb_001348_010 0.1580880698 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
4 Hb_003097_130 0.1589309322 - - conserved hypothetical protein [Ricinus communis]
5 Hb_021065_010 0.1635456934 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
6 Hb_000529_010 0.1661503791 - - cyclin d, putative [Ricinus communis]
7 Hb_010672_050 0.1662936255 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
8 Hb_013726_010 0.1713577732 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000951_090 0.1735397915 - - Oligopeptide transporter, putative [Ricinus communis]
10 Hb_002805_180 0.1761198344 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000025_160 0.1793229383 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
12 Hb_011174_040 0.1832816112 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002248_010 0.1842338494 - - PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
14 Hb_001437_260 0.1877896958 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
15 Hb_093218_010 0.1878572574 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
16 Hb_000003_110 0.1883288005 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_000714_060 0.1893811808 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
18 Hb_032260_060 0.1894189725 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
19 Hb_003299_020 0.1894213802 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
20 Hb_061222_010 0.189745105 - - hypothetical protein RCOM_0012650 [Ricinus communis]

Gene co-expression network

sample Hb_001675_170 Hb_001675_170 Hb_000032_250 Hb_000032_250 Hb_001675_170--Hb_000032_250 Hb_001348_010 Hb_001348_010 Hb_001675_170--Hb_001348_010 Hb_003097_130 Hb_003097_130 Hb_001675_170--Hb_003097_130 Hb_021065_010 Hb_021065_010 Hb_001675_170--Hb_021065_010 Hb_000529_010 Hb_000529_010 Hb_001675_170--Hb_000529_010 Hb_010672_050 Hb_010672_050 Hb_001675_170--Hb_010672_050 Hb_013726_010 Hb_013726_010 Hb_000032_250--Hb_013726_010 Hb_000028_490 Hb_000028_490 Hb_000032_250--Hb_000028_490 Hb_004545_070 Hb_004545_070 Hb_000032_250--Hb_004545_070 Hb_000165_200 Hb_000165_200 Hb_000032_250--Hb_000165_200 Hb_028872_160 Hb_028872_160 Hb_000032_250--Hb_028872_160 Hb_002292_080 Hb_002292_080 Hb_001348_010--Hb_002292_080 Hb_000310_110 Hb_000310_110 Hb_001348_010--Hb_000310_110 Hb_000997_240 Hb_000997_240 Hb_001348_010--Hb_000997_240 Hb_012395_050 Hb_012395_050 Hb_001348_010--Hb_012395_050 Hb_001138_070 Hb_001138_070 Hb_001348_010--Hb_001138_070 Hb_001085_190 Hb_001085_190 Hb_001348_010--Hb_001085_190 Hb_003097_130--Hb_021065_010 Hb_005675_050 Hb_005675_050 Hb_003097_130--Hb_005675_050 Hb_004122_010 Hb_004122_010 Hb_003097_130--Hb_004122_010 Hb_001287_090 Hb_001287_090 Hb_003097_130--Hb_001287_090 Hb_009767_060 Hb_009767_060 Hb_003097_130--Hb_009767_060 Hb_005181_170 Hb_005181_170 Hb_003097_130--Hb_005181_170 Hb_000418_170 Hb_000418_170 Hb_021065_010--Hb_000418_170 Hb_001247_150 Hb_001247_150 Hb_021065_010--Hb_001247_150 Hb_021065_010--Hb_005675_050 Hb_000527_050 Hb_000527_050 Hb_021065_010--Hb_000527_050 Hb_021065_010--Hb_001085_190 Hb_000025_160 Hb_000025_160 Hb_000529_010--Hb_000025_160 Hb_042083_030 Hb_042083_030 Hb_000529_010--Hb_042083_030 Hb_000011_310 Hb_000011_310 Hb_000529_010--Hb_000011_310 Hb_000920_160 Hb_000920_160 Hb_000529_010--Hb_000920_160 Hb_000120_940 Hb_000120_940 Hb_000529_010--Hb_000120_940 Hb_005333_080 Hb_005333_080 Hb_010672_050--Hb_005333_080 Hb_003299_020 Hb_003299_020 Hb_010672_050--Hb_003299_020 Hb_001019_160 Hb_001019_160 Hb_010672_050--Hb_001019_160 Hb_012760_090 Hb_012760_090 Hb_010672_050--Hb_012760_090 Hb_000735_060 Hb_000735_060 Hb_010672_050--Hb_000735_060 Hb_011174_040 Hb_011174_040 Hb_010672_050--Hb_011174_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0577814 0.458933 0.600262 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0416176 0.0764241 0.284763 0.254769

CAGE analysis