Hb_001675_180

Information

Type -
Description -
Location Contig1675: 121232-131172
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05060g
description POPTRDRAFT_553737; hypothetical protein
nr
ID XP_012073378.1
description PREDICTED: golgin candidate 5 [Jatropha curcas]
swissprot
ID Q0WVL7
description Golgin candidate 5 OS=Arabidopsis thaliana GN=GC5 PE=1 SV=1
trembl
ID A0A067KQL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06309 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15522: 121471-131075 , PASA_asmbl_15523: 121471-131056 , PASA_asmbl_15524: 130270-130570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_180 0.0 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
2 Hb_044728_010 0.0637824654 - - -
3 Hb_000072_220 0.064226718 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
4 Hb_000010_330 0.0660485741 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
5 Hb_001776_140 0.0706019263 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_008643_210 0.0708375355 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
7 Hb_000165_250 0.0737664533 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
8 Hb_009548_020 0.0749114707 - - structural constituent of cell wall, putative [Ricinus communis]
9 Hb_011139_030 0.0758288472 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
10 Hb_000796_220 0.0761086403 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
11 Hb_172632_080 0.076237162 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
12 Hb_004841_010 0.0763666063 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
13 Hb_006649_050 0.0766142939 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
14 Hb_000428_050 0.0768668117 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
15 Hb_009767_110 0.0769067383 - - -
16 Hb_000261_350 0.076967565 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
17 Hb_004221_020 0.0772856968 - - protein binding protein, putative [Ricinus communis]
18 Hb_003195_070 0.0778931472 - - Uncharacterized protein isoform 1 [Theobroma cacao]
19 Hb_048937_040 0.0784877817 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
20 Hb_004109_090 0.078954166 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001675_180 Hb_001675_180 Hb_044728_010 Hb_044728_010 Hb_001675_180--Hb_044728_010 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_000010_330 Hb_000010_330 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250 Hb_009767_110 Hb_009767_110 Hb_044728_010--Hb_009767_110 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_004221_020 Hb_004221_020 Hb_000072_220--Hb_004221_020 Hb_002835_370 Hb_002835_370 Hb_000072_220--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_000072_220--Hb_010139_040 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_009548_020 Hb_009548_020 Hb_000072_220--Hb_009548_020 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_000428_050 Hb_000428_050 Hb_001776_140--Hb_000428_050 Hb_000120_790 Hb_000120_790 Hb_001776_140--Hb_000120_790 Hb_001545_120 Hb_001545_120 Hb_001776_140--Hb_001545_120 Hb_001776_140--Hb_044728_010 Hb_000243_030 Hb_000243_030 Hb_001776_140--Hb_000243_030 Hb_016172_020 Hb_016172_020 Hb_008643_210--Hb_016172_020 Hb_002045_240 Hb_002045_240 Hb_008643_210--Hb_002045_240 Hb_004841_010 Hb_004841_010 Hb_008643_210--Hb_004841_010 Hb_000060_090 Hb_000060_090 Hb_008643_210--Hb_000060_090 Hb_023386_020 Hb_023386_020 Hb_008643_210--Hb_023386_020 Hb_008643_210--Hb_000010_330 Hb_000029_050 Hb_000029_050 Hb_000165_250--Hb_000029_050 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1046 17.4088 13.4451 17.9616 30.2916 42.8524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8989 27.7004 36.0235 16.5838 25.4213

CAGE analysis