Hb_001675_260

Information

Type -
Description -
Location Contig1675: 182622-185881
Sequence    

Annotation

kegg
ID rcu:RCOM_1493010
description nitrate transporter, putative
nr
ID XP_002516008.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9M817
description Protein NRT1/ PTR FAMILY 1.2 OS=Arabidopsis thaliana GN=NPF1.2 PE=1 SV=1
trembl
ID B9RQI9
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1493010 PE=3 SV=1
Gene Ontology
ID GO:0005886
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15529: 182577-185954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_260 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_003529_010 0.065397207 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
3 Hb_001318_180 0.0736685326 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
4 Hb_027402_110 0.0793508817 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
5 Hb_004007_190 0.0933723812 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
6 Hb_004157_060 0.0956024995 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
7 Hb_000604_050 0.1152550906 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
8 Hb_002783_210 0.1169842492 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
9 Hb_001255_030 0.1191935081 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
10 Hb_000021_010 0.1193078373 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001766_140 0.1224725276 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
12 Hb_008566_070 0.1227069747 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003906_150 0.1289131351 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
14 Hb_003939_090 0.1309157494 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_000120_600 0.1317967891 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
16 Hb_123887_010 0.1327106137 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
17 Hb_008200_010 0.1378309671 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
18 Hb_017549_010 0.1407138492 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
19 Hb_001502_010 0.1419995236 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
20 Hb_000840_220 0.1452664888 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]

Gene co-expression network

sample Hb_001675_260 Hb_001675_260 Hb_003529_010 Hb_003529_010 Hb_001675_260--Hb_003529_010 Hb_001318_180 Hb_001318_180 Hb_001675_260--Hb_001318_180 Hb_027402_110 Hb_027402_110 Hb_001675_260--Hb_027402_110 Hb_004007_190 Hb_004007_190 Hb_001675_260--Hb_004007_190 Hb_004157_060 Hb_004157_060 Hb_001675_260--Hb_004157_060 Hb_000604_050 Hb_000604_050 Hb_001675_260--Hb_000604_050 Hb_003529_010--Hb_004007_190 Hb_003529_010--Hb_001318_180 Hb_000021_010 Hb_000021_010 Hb_003529_010--Hb_000021_010 Hb_003529_010--Hb_000604_050 Hb_002783_210 Hb_002783_210 Hb_003529_010--Hb_002783_210 Hb_001318_180--Hb_004007_190 Hb_001318_180--Hb_000021_010 Hb_003906_150 Hb_003906_150 Hb_001318_180--Hb_003906_150 Hb_001318_180--Hb_027402_110 Hb_001766_140 Hb_001766_140 Hb_027402_110--Hb_001766_140 Hb_008200_010 Hb_008200_010 Hb_027402_110--Hb_008200_010 Hb_001502_010 Hb_001502_010 Hb_027402_110--Hb_001502_010 Hb_001255_030 Hb_001255_030 Hb_027402_110--Hb_001255_030 Hb_005695_050 Hb_005695_050 Hb_027402_110--Hb_005695_050 Hb_002025_120 Hb_002025_120 Hb_004007_190--Hb_002025_120 Hb_004007_190--Hb_000021_010 Hb_004007_190--Hb_000604_050 Hb_004157_060--Hb_027402_110 Hb_004157_060--Hb_001766_140 Hb_004157_060--Hb_000021_010 Hb_004157_060--Hb_001318_180 Hb_006187_020 Hb_006187_020 Hb_004157_060--Hb_006187_020 Hb_000604_050--Hb_003906_150 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_103149_010 Hb_103149_010 Hb_000604_050--Hb_103149_010 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0193694 43.3891 11.93 93.5814 0.074425 0.0185807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.58839 3.36892

CAGE analysis