Hb_001675_270

Information

Type -
Description -
Location Contig1675: 192659-210269
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05020g
description POPTRDRAFT_756875; isochorismatase hydrolase family protein
nr
ID XP_012073389.1
description PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
swissprot
ID Q93Z51
description Probable inactive nicotinamidase At3g16190 OS=Arabidopsis thaliana GN=At3g16190 PE=2 SV=1
trembl
ID A0A067KM17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06317 PE=4 SV=1
Gene Ontology
ID GO:0008908
description isochorismatase hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15530: 201084-210208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_270 0.0 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
2 Hb_005568_050 0.0801035741 - - ascorbate peroxidase [Hevea brasiliensis]
3 Hb_002316_020 0.0975660153 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
4 Hb_003607_140 0.105495868 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
5 Hb_010174_180 0.1072727233 - - protein binding protein, putative [Ricinus communis]
6 Hb_005582_030 0.121977906 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
7 Hb_001439_010 0.1235699648 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
8 Hb_006469_090 0.1261797356 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
9 Hb_000077_400 0.1324851098 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_000042_380 0.1328756427 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
11 Hb_002635_020 0.1347384736 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
12 Hb_000731_210 0.1375025641 - - conserved hypothetical protein [Ricinus communis]
13 Hb_031385_010 0.137911324 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
14 Hb_001048_100 0.1395739641 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
15 Hb_003879_020 0.1421095147 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
16 Hb_000760_080 0.1435448302 - - mutt domain protein, putative [Ricinus communis]
17 Hb_001775_120 0.1438331633 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
18 Hb_000753_110 0.1440633264 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
19 Hb_002503_050 0.1456372181 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_000230_360 0.1460821133 - - PREDICTED: BI1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001675_270 Hb_001675_270 Hb_005568_050 Hb_005568_050 Hb_001675_270--Hb_005568_050 Hb_002316_020 Hb_002316_020 Hb_001675_270--Hb_002316_020 Hb_003607_140 Hb_003607_140 Hb_001675_270--Hb_003607_140 Hb_010174_180 Hb_010174_180 Hb_001675_270--Hb_010174_180 Hb_005582_030 Hb_005582_030 Hb_001675_270--Hb_005582_030 Hb_001439_010 Hb_001439_010 Hb_001675_270--Hb_001439_010 Hb_000760_080 Hb_000760_080 Hb_005568_050--Hb_000760_080 Hb_000042_380 Hb_000042_380 Hb_005568_050--Hb_000042_380 Hb_005568_050--Hb_003607_140 Hb_005568_050--Hb_010174_180 Hb_005568_050--Hb_002316_020 Hb_002316_020--Hb_010174_180 Hb_031385_010 Hb_031385_010 Hb_002316_020--Hb_031385_010 Hb_002316_020--Hb_003607_140 Hb_000230_360 Hb_000230_360 Hb_002316_020--Hb_000230_360 Hb_001048_100 Hb_001048_100 Hb_002316_020--Hb_001048_100 Hb_003607_140--Hb_010174_180 Hb_006469_090 Hb_006469_090 Hb_003607_140--Hb_006469_090 Hb_003607_140--Hb_001439_010 Hb_002635_020 Hb_002635_020 Hb_003607_140--Hb_002635_020 Hb_000210_040 Hb_000210_040 Hb_003607_140--Hb_000210_040 Hb_010174_180--Hb_031385_010 Hb_010174_180--Hb_002635_020 Hb_000731_210 Hb_000731_210 Hb_010174_180--Hb_000731_210 Hb_005582_030--Hb_002316_020 Hb_070136_010 Hb_070136_010 Hb_005582_030--Hb_070136_010 Hb_002503_050 Hb_002503_050 Hb_005582_030--Hb_002503_050 Hb_000320_450 Hb_000320_450 Hb_005582_030--Hb_000320_450 Hb_005582_030--Hb_000230_360 Hb_001439_010--Hb_006469_090 Hb_000680_070 Hb_000680_070 Hb_001439_010--Hb_000680_070 Hb_005663_090 Hb_005663_090 Hb_001439_010--Hb_005663_090 Hb_003879_020 Hb_003879_020 Hb_001439_010--Hb_003879_020 Hb_004032_110 Hb_004032_110 Hb_001439_010--Hb_004032_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0527172 1.13653 2.79639 2.0368 0.0987797 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200651 0.126269 0.117502 1.94708 2.54917

CAGE analysis