Hb_001675_290

Information

Type -
Description -
Location Contig1675: 214583-217261
Sequence    

Annotation

kegg
ID tcc:TCM_028827
description Basic helix-loop-helix DNA-binding superfamily protein isoform 1
nr
ID XP_012073390.1
description PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S3D1
description Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2
trembl
ID A0A067KME3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06318 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh68-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15531: 214573-215918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_290 0.0 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
2 Hb_007749_020 0.1052402515 - - receptor-kinase, putative [Ricinus communis]
3 Hb_036029_020 0.1105692623 - - PREDICTED: patellin-3-like [Jatropha curcas]
4 Hb_001369_190 0.1151273242 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
5 Hb_006026_020 0.117407787 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
6 Hb_077694_020 0.1186499532 - - SAUR family protein [Theobroma cacao]
7 Hb_004970_100 0.1215386016 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
8 Hb_001417_090 0.1238675936 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
9 Hb_001856_130 0.1282517021 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
10 Hb_000172_230 0.130332891 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
11 Hb_000120_600 0.13220253 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
12 Hb_153180_010 0.1328874732 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
13 Hb_004031_050 0.1330643535 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
14 Hb_107658_010 0.1381633329 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
15 Hb_001677_190 0.1401160221 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_001999_200 0.1406294973 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
17 Hb_011355_020 0.1455813668 - - extensin, proline-rich protein, putative [Ricinus communis]
18 Hb_002597_030 0.1456378395 - - -
19 Hb_000714_070 0.1464996039 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
20 Hb_002522_040 0.1469619579 - - hypothetical protein JCGZ_04542 [Jatropha curcas]

Gene co-expression network

sample Hb_001675_290 Hb_001675_290 Hb_007749_020 Hb_007749_020 Hb_001675_290--Hb_007749_020 Hb_036029_020 Hb_036029_020 Hb_001675_290--Hb_036029_020 Hb_001369_190 Hb_001369_190 Hb_001675_290--Hb_001369_190 Hb_006026_020 Hb_006026_020 Hb_001675_290--Hb_006026_020 Hb_077694_020 Hb_077694_020 Hb_001675_290--Hb_077694_020 Hb_004970_100 Hb_004970_100 Hb_001675_290--Hb_004970_100 Hb_007749_020--Hb_036029_020 Hb_003529_240 Hb_003529_240 Hb_007749_020--Hb_003529_240 Hb_000172_230 Hb_000172_230 Hb_007749_020--Hb_000172_230 Hb_107658_010 Hb_107658_010 Hb_007749_020--Hb_107658_010 Hb_002272_200 Hb_002272_200 Hb_007749_020--Hb_002272_200 Hb_071433_010 Hb_071433_010 Hb_036029_020--Hb_071433_010 Hb_036029_020--Hb_000172_230 Hb_002597_030 Hb_002597_030 Hb_036029_020--Hb_002597_030 Hb_036029_020--Hb_004970_100 Hb_004558_060 Hb_004558_060 Hb_001369_190--Hb_004558_060 Hb_006088_020 Hb_006088_020 Hb_001369_190--Hb_006088_020 Hb_002918_270 Hb_002918_270 Hb_001369_190--Hb_002918_270 Hb_003607_080 Hb_003607_080 Hb_001369_190--Hb_003607_080 Hb_005215_050 Hb_005215_050 Hb_001369_190--Hb_005215_050 Hb_000849_030 Hb_000849_030 Hb_001369_190--Hb_000849_030 Hb_011355_020 Hb_011355_020 Hb_006026_020--Hb_011355_020 Hb_006026_020--Hb_004970_100 Hb_004031_050 Hb_004031_050 Hb_006026_020--Hb_004031_050 Hb_000373_260 Hb_000373_260 Hb_006026_020--Hb_000373_260 Hb_002897_030 Hb_002897_030 Hb_006026_020--Hb_002897_030 Hb_000149_020 Hb_000149_020 Hb_006026_020--Hb_000149_020 Hb_004881_010 Hb_004881_010 Hb_077694_020--Hb_004881_010 Hb_153180_010 Hb_153180_010 Hb_077694_020--Hb_153180_010 Hb_003427_020 Hb_003427_020 Hb_077694_020--Hb_003427_020 Hb_001417_090 Hb_001417_090 Hb_077694_020--Hb_001417_090 Hb_001856_130 Hb_001856_130 Hb_077694_020--Hb_001856_130 Hb_003777_150 Hb_003777_150 Hb_004970_100--Hb_003777_150 Hb_005214_050 Hb_005214_050 Hb_004970_100--Hb_005214_050 Hb_004970_100--Hb_000373_260 Hb_004970_100--Hb_001417_090 Hb_004970_100--Hb_004031_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.390251 8.85944 9.57003 29.0886 0.283106 0.521575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.226069 0.071127 0 2.11222 3.51404

CAGE analysis