Hb_001675_310

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig1675: 250155-253706
Sequence    

Annotation

kegg
ID rcu:RCOM_1492640
description Auxin-responsive protein IAA27, putative
nr
ID XP_012073397.1
description PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZSY8
description Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1
trembl
ID A0A067KYE4
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_06321 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa27-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15536: 250088-253656
cDNA
(Sanger)
(ID:Location)		 014_O04.ab1: 250088-251517

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_310 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
2 Hb_000210_160 0.0962476441 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_003849_200 0.1055426609 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
4 Hb_000563_630 0.118719538 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
5 Hb_002233_080 0.1191095701 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_000666_120 0.1214186949 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_003435_040 0.1250447816 - - tonoplast intrinsic protein [Hevea brasiliensis]
8 Hb_076771_010 0.1302041744 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_002510_100 0.1320018937 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_001999_200 0.1327551019 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
11 Hb_000320_270 0.1328266905 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
12 Hb_000654_050 0.1372625926 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
13 Hb_002518_220 0.1381379172 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
14 Hb_034507_090 0.1383031009 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
15 Hb_003529_240 0.1394474383 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
16 Hb_004297_080 0.1413105666 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_001048_070 0.1416465258 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
18 Hb_012308_050 0.1424561453 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
19 Hb_000991_080 0.1435939898 - - kinase, putative [Ricinus communis]
20 Hb_012539_100 0.144390538 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]

Gene co-expression network

sample Hb_001675_310 Hb_001675_310 Hb_000210_160 Hb_000210_160 Hb_001675_310--Hb_000210_160 Hb_003849_200 Hb_003849_200 Hb_001675_310--Hb_003849_200 Hb_000563_630 Hb_000563_630 Hb_001675_310--Hb_000563_630 Hb_002233_080 Hb_002233_080 Hb_001675_310--Hb_002233_080 Hb_000666_120 Hb_000666_120 Hb_001675_310--Hb_000666_120 Hb_003435_040 Hb_003435_040 Hb_001675_310--Hb_003435_040 Hb_000210_160--Hb_000563_630 Hb_000210_160--Hb_003849_200 Hb_000210_160--Hb_003435_040 Hb_034507_090 Hb_034507_090 Hb_000210_160--Hb_034507_090 Hb_000152_170 Hb_000152_170 Hb_000210_160--Hb_000152_170 Hb_001013_080 Hb_001013_080 Hb_003849_200--Hb_001013_080 Hb_001048_070 Hb_001048_070 Hb_003849_200--Hb_001048_070 Hb_008725_020 Hb_008725_020 Hb_003849_200--Hb_008725_020 Hb_003849_200--Hb_003435_040 Hb_004634_030 Hb_004634_030 Hb_003849_200--Hb_004634_030 Hb_000563_630--Hb_034507_090 Hb_000742_130 Hb_000742_130 Hb_000563_630--Hb_000742_130 Hb_006120_210 Hb_006120_210 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_000563_630--Hb_003849_200 Hb_001019_020 Hb_001019_020 Hb_002233_080--Hb_001019_020 Hb_076771_010 Hb_076771_010 Hb_002233_080--Hb_076771_010 Hb_012272_010 Hb_012272_010 Hb_002233_080--Hb_012272_010 Hb_004297_080 Hb_004297_080 Hb_002233_080--Hb_004297_080 Hb_094437_050 Hb_094437_050 Hb_002233_080--Hb_094437_050 Hb_000666_120--Hb_004297_080 Hb_001999_200 Hb_001999_200 Hb_000666_120--Hb_001999_200 Hb_000403_100 Hb_000403_100 Hb_000666_120--Hb_000403_100 Hb_007292_050 Hb_007292_050 Hb_000666_120--Hb_007292_050 Hb_002311_110 Hb_002311_110 Hb_000666_120--Hb_002311_110 Hb_006736_040 Hb_006736_040 Hb_003435_040--Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_003435_040--Hb_024650_010 Hb_003435_040--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_003435_040--Hb_000991_080 Hb_001518_030 Hb_001518_030 Hb_003435_040--Hb_001518_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8508 40.5326 30.223 60.5047 0.948637 2.71352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.410706 0.0994188 0.513468 10.5673 15.6966

CAGE analysis