Hb_001675_350

Information

Type -
Description -
Location Contig1675: 286397-286627
Sequence    

Annotation

kegg
ID rcu:RCOM_1314170
description hypothetical protein
nr
ID ACV50436.1
description Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D3GC10
description Avr9/Cf-9 rapidly elicited protein OS=Jatropha curcas GN=ACRE PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_350 0.0 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
2 Hb_002303_050 0.0785673384 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
3 Hb_004474_070 0.0807599988 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
4 Hb_001953_010 0.0978035797 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
5 Hb_000139_390 0.1067914289 - - -
6 Hb_000120_600 0.1172565958 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
7 Hb_002804_070 0.1217438851 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
8 Hb_005946_200 0.1219519033 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
9 Hb_017549_010 0.1233481907 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
10 Hb_000000_320 0.1253130539 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
11 Hb_001022_070 0.1285989771 - - cell wall invertase [Manihot esculenta]
12 Hb_004374_170 0.1324791896 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
13 Hb_005428_010 0.1327564377 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001856_130 0.132961392 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
15 Hb_029576_070 0.1331638439 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
16 Hb_003073_060 0.1338119704 - - -
17 Hb_001221_050 0.1350588546 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
18 Hb_001115_100 0.1353966804 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
19 Hb_051408_010 0.137688339 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_011671_360 0.140239928 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001675_350 Hb_001675_350 Hb_002303_050 Hb_002303_050 Hb_001675_350--Hb_002303_050 Hb_004474_070 Hb_004474_070 Hb_001675_350--Hb_004474_070 Hb_001953_010 Hb_001953_010 Hb_001675_350--Hb_001953_010 Hb_000139_390 Hb_000139_390 Hb_001675_350--Hb_000139_390 Hb_000120_600 Hb_000120_600 Hb_001675_350--Hb_000120_600 Hb_002804_070 Hb_002804_070 Hb_001675_350--Hb_002804_070 Hb_002303_050--Hb_004474_070 Hb_002303_050--Hb_001953_010 Hb_005946_200 Hb_005946_200 Hb_002303_050--Hb_005946_200 Hb_002303_050--Hb_002804_070 Hb_128216_010 Hb_128216_010 Hb_002303_050--Hb_128216_010 Hb_004474_070--Hb_001953_010 Hb_004474_070--Hb_128216_010 Hb_004474_070--Hb_002804_070 Hb_004474_070--Hb_000139_390 Hb_000000_320 Hb_000000_320 Hb_001953_010--Hb_000000_320 Hb_001953_010--Hb_002804_070 Hb_001022_070 Hb_001022_070 Hb_001953_010--Hb_001022_070 Hb_001953_010--Hb_128216_010 Hb_004112_070 Hb_004112_070 Hb_000139_390--Hb_004112_070 Hb_000139_390--Hb_001953_010 Hb_000175_370 Hb_000175_370 Hb_000139_390--Hb_000175_370 Hb_000120_560 Hb_000120_560 Hb_000139_390--Hb_000120_560 Hb_000684_110 Hb_000684_110 Hb_000139_390--Hb_000684_110 Hb_001856_130 Hb_001856_130 Hb_000120_600--Hb_001856_130 Hb_000120_600--Hb_002804_070 Hb_000120_600--Hb_001953_010 Hb_017549_010 Hb_017549_010 Hb_000120_600--Hb_017549_010 Hb_004374_170 Hb_004374_170 Hb_000120_600--Hb_004374_170 Hb_000120_600--Hb_004474_070 Hb_002804_070--Hb_004374_170 Hb_002804_070--Hb_005946_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.70354 4.80683 13.8565 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.83025

CAGE analysis