Hb_001676_030

Information

Type -
Description -
Location Contig1676: 67858-72495
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15543: 72037-74693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001676_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_101040_010 0.1747472551 - - -
3 Hb_005671_030 0.184377509 - - -
4 Hb_000071_200 0.210464488 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
5 Hb_187661_010 0.2132294559 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
6 Hb_008891_020 0.2285273863 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
7 Hb_056305_010 0.2285595486 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_002257_070 0.2286970191 - - hypothetical protein, partial [Pseudomonas fluorescens]
9 Hb_003017_010 0.2290929264 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
10 Hb_003985_020 0.2302084755 - - -
11 Hb_005539_300 0.2313682199 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
12 Hb_012587_010 0.2318781749 - - -
13 Hb_066620_010 0.2352744825 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
14 Hb_142068_020 0.2356199626 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
15 Hb_000454_020 0.2361617027 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_044767_010 0.2365927226 - - -
17 Hb_001887_030 0.238011966 - - -
18 Hb_178389_010 0.2388791705 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
19 Hb_000656_130 0.2393120484 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
20 Hb_005504_010 0.2426207072 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_001676_030 Hb_001676_030 Hb_101040_010 Hb_101040_010 Hb_001676_030--Hb_101040_010 Hb_005671_030 Hb_005671_030 Hb_001676_030--Hb_005671_030 Hb_000071_200 Hb_000071_200 Hb_001676_030--Hb_000071_200 Hb_187661_010 Hb_187661_010 Hb_001676_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_001676_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_001676_030--Hb_056305_010 Hb_005504_010 Hb_005504_010 Hb_101040_010--Hb_005504_010 Hb_101040_010--Hb_000071_200 Hb_000317_090 Hb_000317_090 Hb_101040_010--Hb_000317_090 Hb_138652_020 Hb_138652_020 Hb_101040_010--Hb_138652_020 Hb_002837_090 Hb_002837_090 Hb_101040_010--Hb_002837_090 Hb_005671_030--Hb_187661_010 Hb_005671_030--Hb_008891_020 Hb_005671_030--Hb_056305_010 Hb_002257_070 Hb_002257_070 Hb_005671_030--Hb_002257_070 Hb_003017_010 Hb_003017_010 Hb_005671_030--Hb_003017_010 Hb_003985_020 Hb_003985_020 Hb_005671_030--Hb_003985_020 Hb_001217_060 Hb_001217_060 Hb_000071_200--Hb_001217_060 Hb_012188_010 Hb_012188_010 Hb_000071_200--Hb_012188_010 Hb_032076_010 Hb_032076_010 Hb_000071_200--Hb_032076_010 Hb_005539_300 Hb_005539_300 Hb_000071_200--Hb_005539_300 Hb_187661_010--Hb_008891_020 Hb_187661_010--Hb_056305_010 Hb_187661_010--Hb_002257_070 Hb_187661_010--Hb_003017_010 Hb_187661_010--Hb_003985_020 Hb_012587_010 Hb_012587_010 Hb_187661_010--Hb_012587_010 Hb_008891_020--Hb_056305_010 Hb_008891_020--Hb_002257_070 Hb_008891_020--Hb_003017_010 Hb_008891_020--Hb_003985_020 Hb_008891_020--Hb_012587_010 Hb_066620_010 Hb_066620_010 Hb_008891_020--Hb_066620_010 Hb_056305_010--Hb_002257_070 Hb_056305_010--Hb_003017_010 Hb_056305_010--Hb_003985_020 Hb_056305_010--Hb_012587_010 Hb_056305_010--Hb_066620_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73359 0.113598 0.0227933 0.00298318 0.0289287 0.952971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0149862 0.0462948 0.0167229

CAGE analysis