Hb_001676_040

Information

Type -
Description -
Location Contig1676: 75280-76195
Sequence    

Annotation

kegg
ID rcu:RCOM_0547690
description hypothetical protein
nr
ID XP_012076158.1
description PREDICTED: uncharacterized protein LOC105637261 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SX54
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0547690 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 5\ -3\ exonuclease family protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001676_040 0.0 - - PREDICTED: uncharacterized protein LOC105637261 isoform X2 [Jatropha curcas]
2 Hb_037605_010 0.2436236457 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
3 Hb_000115_270 0.2534667288 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
4 Hb_144552_010 0.2554045053 - - CC-NBS-LRR protein, putative [Theobroma cacao]
5 Hb_010172_060 0.2600244306 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
6 Hb_009265_020 0.2643431523 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_046609_010 0.2729945004 - - -
8 Hb_000230_340 0.2762864963 - - Transcription elongation factor, putative [Ricinus communis]
9 Hb_129358_010 0.2780888749 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
10 Hb_010024_010 0.2799322401 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_053582_010 0.2799820567 - - -
12 Hb_003623_020 0.2809793886 - - -
13 Hb_022593_060 0.2811182803 - - -
14 Hb_001241_060 0.2828146986 - - -
15 Hb_007639_010 0.2848536061 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
16 Hb_002490_040 0.2872295951 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
17 Hb_001206_070 0.2879250698 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_004429_040 0.2934686428 - - -
19 Hb_003362_010 0.296678511 - - Actin-related protein 2/3 complex subunit 4 [Morus notabilis]
20 Hb_101151_030 0.2972891517 - - -

Gene co-expression network

sample Hb_001676_040 Hb_001676_040 Hb_037605_010 Hb_037605_010 Hb_001676_040--Hb_037605_010 Hb_000115_270 Hb_000115_270 Hb_001676_040--Hb_000115_270 Hb_144552_010 Hb_144552_010 Hb_001676_040--Hb_144552_010 Hb_010172_060 Hb_010172_060 Hb_001676_040--Hb_010172_060 Hb_009265_020 Hb_009265_020 Hb_001676_040--Hb_009265_020 Hb_046609_010 Hb_046609_010 Hb_001676_040--Hb_046609_010 Hb_000195_050 Hb_000195_050 Hb_037605_010--Hb_000195_050 Hb_000563_290 Hb_000563_290 Hb_037605_010--Hb_000563_290 Hb_038675_010 Hb_038675_010 Hb_037605_010--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_037605_010--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_037605_010--Hb_011360_100 Hb_002490_040 Hb_002490_040 Hb_037605_010--Hb_002490_040 Hb_000115_270--Hb_009265_020 Hb_001691_160 Hb_001691_160 Hb_000115_270--Hb_001691_160 Hb_004282_030 Hb_004282_030 Hb_000115_270--Hb_004282_030 Hb_056531_040 Hb_056531_040 Hb_000115_270--Hb_056531_040 Hb_000059_090 Hb_000059_090 Hb_000115_270--Hb_000059_090 Hb_098842_010 Hb_098842_010 Hb_000115_270--Hb_098842_010 Hb_144552_010--Hb_010172_060 Hb_003623_020 Hb_003623_020 Hb_144552_010--Hb_003623_020 Hb_004947_070 Hb_004947_070 Hb_144552_010--Hb_004947_070 Hb_101151_030 Hb_101151_030 Hb_144552_010--Hb_101151_030 Hb_001969_050 Hb_001969_050 Hb_144552_010--Hb_001969_050 Hb_010172_060--Hb_046609_010 Hb_000510_070 Hb_000510_070 Hb_010172_060--Hb_000510_070 Hb_129358_010 Hb_129358_010 Hb_010172_060--Hb_129358_010 Hb_010172_060--Hb_003623_020 Hb_007639_010 Hb_007639_010 Hb_010172_060--Hb_007639_010 Hb_009265_020--Hb_098842_010 Hb_009265_020--Hb_002490_040 Hb_176022_010 Hb_176022_010 Hb_009265_020--Hb_176022_010 Hb_009265_020--Hb_056531_040 Hb_009265_020--Hb_000059_090 Hb_046609_010--Hb_129358_010 Hb_046609_010--Hb_007639_010 Hb_003362_010 Hb_003362_010 Hb_046609_010--Hb_003362_010 Hb_150498_010 Hb_150498_010 Hb_046609_010--Hb_150498_010 Hb_010272_020 Hb_010272_020 Hb_046609_010--Hb_010272_020 Hb_073171_060 Hb_073171_060 Hb_046609_010--Hb_073171_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15272 0 0 0 0 10.0878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.326805 1.25604 0.357048

CAGE analysis