Hb_001677_040

Information

Type -
Description -
Location Contig1677: 25696-31288
Sequence    

Annotation

kegg
ID rcu:RCOM_1481460
description Serine/threonine-protein kinase Nek8, putative
nr
ID XP_012088597.1
description PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067L905
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01387 PE=4 SV=1
Gene Ontology
ID GO:0016301
description regulator of chromosome condensation repeat-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15548: 29179-30752 , PASA_asmbl_15550: 29179-31842 , PASA_asmbl_15551: 28365-30752 , PASA_asmbl_15552: 26853-31842 , PASA_asmbl_15554: 26619-27874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_040 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
2 Hb_001195_660 0.1083702999 - - metalloendopeptidase, putative [Ricinus communis]
3 Hb_000417_050 0.1105794636 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
4 Hb_000333_030 0.1116525262 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_002662_110 0.1146400727 - - Kinesin heavy chain, putative [Ricinus communis]
6 Hb_002675_080 0.1183114318 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
7 Hb_001053_020 0.1184125802 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
8 Hb_003006_090 0.118818321 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
9 Hb_000271_220 0.119623928 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
10 Hb_000357_070 0.1211169977 - - -
11 Hb_000056_110 0.124000166 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
12 Hb_001252_030 0.1276711664 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
13 Hb_000347_190 0.1289072368 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
14 Hb_000227_280 0.1290717337 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
15 Hb_002026_030 0.1297991429 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
16 Hb_000350_030 0.1311712258 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
17 Hb_000099_170 0.1312478683 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
18 Hb_000322_030 0.1316268181 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
19 Hb_003582_090 0.1323281584 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
20 Hb_028396_020 0.1323614356 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]

Gene co-expression network

sample Hb_001677_040 Hb_001677_040 Hb_001195_660 Hb_001195_660 Hb_001677_040--Hb_001195_660 Hb_000417_050 Hb_000417_050 Hb_001677_040--Hb_000417_050 Hb_000333_030 Hb_000333_030 Hb_001677_040--Hb_000333_030 Hb_002662_110 Hb_002662_110 Hb_001677_040--Hb_002662_110 Hb_002675_080 Hb_002675_080 Hb_001677_040--Hb_002675_080 Hb_001053_020 Hb_001053_020 Hb_001677_040--Hb_001053_020 Hb_003847_040 Hb_003847_040 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_003582_090 Hb_003582_090 Hb_001195_660--Hb_003582_090 Hb_000139_300 Hb_000139_300 Hb_001195_660--Hb_000139_300 Hb_004994_330 Hb_004994_330 Hb_000417_050--Hb_004994_330 Hb_002078_390 Hb_002078_390 Hb_000417_050--Hb_002078_390 Hb_000417_050--Hb_002662_110 Hb_000622_050 Hb_000622_050 Hb_000417_050--Hb_000622_050 Hb_001357_050 Hb_001357_050 Hb_000417_050--Hb_001357_050 Hb_000574_170 Hb_000574_170 Hb_000333_030--Hb_000574_170 Hb_010222_040 Hb_010222_040 Hb_000333_030--Hb_010222_040 Hb_002217_360 Hb_002217_360 Hb_000333_030--Hb_002217_360 Hb_000083_080 Hb_000083_080 Hb_000333_030--Hb_000083_080 Hb_000333_030--Hb_002662_110 Hb_002662_110--Hb_004994_330 Hb_005276_070 Hb_005276_070 Hb_002662_110--Hb_005276_070 Hb_000612_090 Hb_000612_090 Hb_002662_110--Hb_000612_090 Hb_003416_020 Hb_003416_020 Hb_002662_110--Hb_003416_020 Hb_000679_080 Hb_000679_080 Hb_002662_110--Hb_000679_080 Hb_032631_030 Hb_032631_030 Hb_002662_110--Hb_032631_030 Hb_000042_050 Hb_000042_050 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_002026_030 Hb_002026_030 Hb_002675_080--Hb_002026_030 Hb_004242_170 Hb_004242_170 Hb_001053_020--Hb_004242_170 Hb_001053_020--Hb_000042_050 Hb_000441_050 Hb_000441_050 Hb_001053_020--Hb_000441_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_009692_040 Hb_009692_040 Hb_001053_020--Hb_009692_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.993554 11.1107 24.521 34.3421 2.70431 2.99204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98019 1.40651 1.63008 6.07778 37.2604

CAGE analysis