Hb_001677_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1677: 32945-35767
Sequence    

Annotation

kegg
ID rcu:RCOM_1481570
description Disease resistance protein RPP8, putative (EC:3.1.3.16)
nr
ID XP_002524222.1
description Disease resistance protein RPP8, putative [Ricinus communis]
swissprot
ID P0C8S1
description Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=3 SV=1
trembl
ID B9SE03
description Disease resistance protein RPP8, putative OS=Ricinus communis GN=RCOM_1481570 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rpp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_050 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
2 Hb_001632_010 0.1241348183 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
3 Hb_088542_010 0.1481223905 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
4 Hb_004007_150 0.1643471459 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
5 Hb_000605_010 0.1654820044 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
6 Hb_001138_010 0.1687791399 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_073212_010 0.1694604706 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
8 Hb_000997_410 0.1775568327 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
9 Hb_001916_120 0.1788923597 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
10 Hb_012384_050 0.1893881489 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
11 Hb_114984_010 0.1936927425 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001935_190 0.1966439279 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
13 Hb_000056_230 0.2017922077 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
14 Hb_006615_100 0.2118409049 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
15 Hb_000101_210 0.2130693941 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
16 Hb_000329_420 0.2131127469 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
17 Hb_000879_050 0.2137240177 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
18 Hb_011953_030 0.2148214036 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
19 Hb_000927_040 0.2181670865 - - -
20 Hb_035662_010 0.2187562173 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001677_050 Hb_001677_050 Hb_001632_010 Hb_001632_010 Hb_001677_050--Hb_001632_010 Hb_088542_010 Hb_088542_010 Hb_001677_050--Hb_088542_010 Hb_004007_150 Hb_004007_150 Hb_001677_050--Hb_004007_150 Hb_000605_010 Hb_000605_010 Hb_001677_050--Hb_000605_010 Hb_001138_010 Hb_001138_010 Hb_001677_050--Hb_001138_010 Hb_073212_010 Hb_073212_010 Hb_001677_050--Hb_073212_010 Hb_001632_010--Hb_088542_010 Hb_001632_010--Hb_073212_010 Hb_129067_010 Hb_129067_010 Hb_001632_010--Hb_129067_010 Hb_001632_010--Hb_000605_010 Hb_012384_050 Hb_012384_050 Hb_001632_010--Hb_012384_050 Hb_088542_010--Hb_073212_010 Hb_088542_010--Hb_129067_010 Hb_088542_010--Hb_000605_010 Hb_000733_040 Hb_000733_040 Hb_088542_010--Hb_000733_040 Hb_003534_040 Hb_003534_040 Hb_004007_150--Hb_003534_040 Hb_004007_150--Hb_073212_010 Hb_000101_210 Hb_000101_210 Hb_004007_150--Hb_000101_210 Hb_031073_010 Hb_031073_010 Hb_004007_150--Hb_031073_010 Hb_004007_150--Hb_088542_010 Hb_000605_010--Hb_001138_010 Hb_000605_010--Hb_073212_010 Hb_002234_220 Hb_002234_220 Hb_000605_010--Hb_002234_220 Hb_000879_050 Hb_000879_050 Hb_000605_010--Hb_000879_050 Hb_000252_090 Hb_000252_090 Hb_001138_010--Hb_000252_090 Hb_001916_120 Hb_001916_120 Hb_001138_010--Hb_001916_120 Hb_000156_030 Hb_000156_030 Hb_001138_010--Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_001138_010--Hb_003540_140 Hb_073212_010--Hb_012384_050 Hb_001691_050 Hb_001691_050 Hb_073212_010--Hb_001691_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9722 4.43705 1.29501 5.60826 12.6644 14.8456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2706 0.524312 0.885393 4.52354 0.597658

CAGE analysis