Hb_001677_060

Information

Type -
Description -
Location Contig1677: 42793-45767
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20650g
description POPTRDRAFT_659628; eukaryotic translation initiation factor 3G family protein
nr
ID XP_012092967.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
swissprot
ID Q28CY2
description Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1
trembl
ID A0A067JKS8
description Eukaryotic translation initiation factor 3 subunit G OS=Jatropha curcas GN=JCGZ_05858 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit g-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15556: 42810-45745 , PASA_asmbl_15557: 44257-44593 , PASA_asmbl_15558: 44833-44982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_060 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
2 Hb_006921_030 0.0932427679 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
3 Hb_000166_110 0.1170204814 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
4 Hb_008085_010 0.1177522377 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
5 Hb_020000_020 0.1195951919 - - Troponin C, skeletal muscle, putative [Ricinus communis]
6 Hb_005539_220 0.1222220153 - - spermidine synthase 1, putative [Ricinus communis]
7 Hb_003766_040 0.1252152244 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_039946_020 0.1268342188 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001638_170 0.1283274615 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
10 Hb_000100_100 0.1317015282 - - hypothetical protein VITISV_027675 [Vitis vinifera]
11 Hb_005608_030 0.132774359 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
12 Hb_008246_040 0.1329818991 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
13 Hb_034506_010 0.1338605177 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
14 Hb_004370_030 0.1350258094 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
15 Hb_008092_040 0.1366013582 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
16 Hb_002054_040 0.1368465663 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
17 Hb_011689_020 0.13715049 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_002163_030 0.1374577944 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
19 Hb_000953_020 0.1376855205 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
20 Hb_007416_280 0.137820599 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001677_060 Hb_001677_060 Hb_006921_030 Hb_006921_030 Hb_001677_060--Hb_006921_030 Hb_000166_110 Hb_000166_110 Hb_001677_060--Hb_000166_110 Hb_008085_010 Hb_008085_010 Hb_001677_060--Hb_008085_010 Hb_020000_020 Hb_020000_020 Hb_001677_060--Hb_020000_020 Hb_005539_220 Hb_005539_220 Hb_001677_060--Hb_005539_220 Hb_003766_040 Hb_003766_040 Hb_001677_060--Hb_003766_040 Hb_039837_010 Hb_039837_010 Hb_006921_030--Hb_039837_010 Hb_006921_030--Hb_000166_110 Hb_002054_040 Hb_002054_040 Hb_006921_030--Hb_002054_040 Hb_011689_020 Hb_011689_020 Hb_006921_030--Hb_011689_020 Hb_000699_140 Hb_000699_140 Hb_006921_030--Hb_000699_140 Hb_000889_020 Hb_000889_020 Hb_000166_110--Hb_000889_020 Hb_000166_110--Hb_002054_040 Hb_005839_060 Hb_005839_060 Hb_000166_110--Hb_005839_060 Hb_004370_030 Hb_004370_030 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_007163_090 Hb_007163_090 Hb_008085_010--Hb_007163_090 Hb_000803_190 Hb_000803_190 Hb_008085_010--Hb_000803_190 Hb_004837_040 Hb_004837_040 Hb_008085_010--Hb_004837_040 Hb_001437_180 Hb_001437_180 Hb_008085_010--Hb_001437_180 Hb_004734_060 Hb_004734_060 Hb_008085_010--Hb_004734_060 Hb_001663_030 Hb_001663_030 Hb_008085_010--Hb_001663_030 Hb_023386_040 Hb_023386_040 Hb_020000_020--Hb_023386_040 Hb_000820_170 Hb_000820_170 Hb_020000_020--Hb_000820_170 Hb_003609_030 Hb_003609_030 Hb_020000_020--Hb_003609_030 Hb_000179_030 Hb_000179_030 Hb_020000_020--Hb_000179_030 Hb_020000_020--Hb_004370_030 Hb_154745_010 Hb_154745_010 Hb_020000_020--Hb_154745_010 Hb_007075_040 Hb_007075_040 Hb_005539_220--Hb_007075_040 Hb_000020_190 Hb_000020_190 Hb_005539_220--Hb_000020_190 Hb_000789_060 Hb_000789_060 Hb_005539_220--Hb_000789_060 Hb_000230_200 Hb_000230_200 Hb_005539_220--Hb_000230_200 Hb_000230_560 Hb_000230_560 Hb_005539_220--Hb_000230_560 Hb_008246_040 Hb_008246_040 Hb_005539_220--Hb_008246_040 Hb_003175_010 Hb_003175_010 Hb_003766_040--Hb_003175_010 Hb_000808_270 Hb_000808_270 Hb_003766_040--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003766_040--Hb_000926_280 Hb_001489_150 Hb_001489_150 Hb_003766_040--Hb_001489_150 Hb_007416_280 Hb_007416_280 Hb_003766_040--Hb_007416_280 Hb_002026_180 Hb_002026_180 Hb_003766_040--Hb_002026_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.7221 36.3681 30.3798 32.7642 17.1807 103.123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.4342 46.679 47.9496 49.655 19.5823

CAGE analysis