Hb_001677_080

Information

Type -
Description -
Location Contig1677: 56564-59559
Sequence    

Annotation

kegg
ID rcu:RCOM_1482320
description mannose-1-phosphate guanyltransferase, putative (EC:2.7.7.13)
nr
ID XP_002524227.1
description mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
swissprot
ID O22287
description Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1
trembl
ID B9SE08
description Mannose-1-phosphate guanyltransferase, putative OS=Ricinus communis GN=RCOM_1482320 PE=4 SV=1
Gene Ontology
ID GO:0004475
description mannose-1-phosphate guanylyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15560: 55932-59545 , PASA_asmbl_15561: 56098-56337
cDNA
(Sanger)
(ID:Location)		 013_E16.ab1: 55942-58647 , 022_E17.ab1: 55943-58640 , 032_F11.ab1: 55953-58159

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_080 0.0 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
2 Hb_001862_140 0.082460822 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
3 Hb_002391_290 0.0846563895 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
4 Hb_001492_020 0.0855765413 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
5 Hb_002828_020 0.0868331257 - - protein binding protein, putative [Ricinus communis]
6 Hb_002235_170 0.0939847316 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
7 Hb_012340_070 0.0977325391 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
8 Hb_000022_020 0.0979199132 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
9 Hb_000990_090 0.0980230085 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
10 Hb_008120_010 0.1010770318 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
11 Hb_000110_190 0.1056823873 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
12 Hb_000640_120 0.1058135217 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
13 Hb_000862_030 0.1088668077 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
14 Hb_150986_010 0.1100408021 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009049_020 0.1108033746 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
16 Hb_012325_030 0.1113567587 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002739_020 0.1117470532 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
18 Hb_005797_010 0.1142883557 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
19 Hb_000345_360 0.1144293215 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
20 Hb_001500_110 0.1155939159 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001677_080 Hb_001677_080 Hb_001862_140 Hb_001862_140 Hb_001677_080--Hb_001862_140 Hb_002391_290 Hb_002391_290 Hb_001677_080--Hb_002391_290 Hb_001492_020 Hb_001492_020 Hb_001677_080--Hb_001492_020 Hb_002828_020 Hb_002828_020 Hb_001677_080--Hb_002828_020 Hb_002235_170 Hb_002235_170 Hb_001677_080--Hb_002235_170 Hb_012340_070 Hb_012340_070 Hb_001677_080--Hb_012340_070 Hb_001862_140--Hb_002391_290 Hb_000110_190 Hb_000110_190 Hb_001862_140--Hb_000110_190 Hb_000004_030 Hb_000004_030 Hb_001862_140--Hb_000004_030 Hb_000990_090 Hb_000990_090 Hb_001862_140--Hb_000990_090 Hb_001862_140--Hb_012340_070 Hb_002391_290--Hb_000990_090 Hb_002391_290--Hb_000004_030 Hb_002391_290--Hb_000110_190 Hb_000345_360 Hb_000345_360 Hb_002391_290--Hb_000345_360 Hb_001492_020--Hb_002235_170 Hb_002213_070 Hb_002213_070 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_007336_010 Hb_007336_010 Hb_001492_020--Hb_007336_010 Hb_000120_060 Hb_000120_060 Hb_001492_020--Hb_000120_060 Hb_001314_010 Hb_001314_010 Hb_001492_020--Hb_001314_010 Hb_001500_110 Hb_001500_110 Hb_002828_020--Hb_001500_110 Hb_008120_010 Hb_008120_010 Hb_002828_020--Hb_008120_010 Hb_002876_320 Hb_002876_320 Hb_002828_020--Hb_002876_320 Hb_002828_020--Hb_001492_020 Hb_000683_070 Hb_000683_070 Hb_002828_020--Hb_000683_070 Hb_002235_170--Hb_001314_010 Hb_105328_020 Hb_105328_020 Hb_002235_170--Hb_105328_020 Hb_000127_040 Hb_000127_040 Hb_002235_170--Hb_000127_040 Hb_000862_030 Hb_000862_030 Hb_002235_170--Hb_000862_030 Hb_002235_170--Hb_002213_070 Hb_000004_020 Hb_000004_020 Hb_012340_070--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_012340_070--Hb_000022_020 Hb_000056_130 Hb_000056_130 Hb_012340_070--Hb_000056_130 Hb_012340_070--Hb_002391_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.1895 56.2379 47.6254 125.936 70.5925 108.697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.042 23.3996 52.2828 85.4714 67.4204

CAGE analysis