Hb_001677_090

Information

Type -
Description -
Location Contig1677: 60984-65586
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20610g
description POPTRDRAFT_822449; hypothetical protein
nr
ID XP_012088552.1
description PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
swissprot
ID Q945M8
description CASP-like protein 5B2 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1
trembl
ID A0A067L901
description CASP-like protein OS=Jatropha curcas GN=JCGZ_01382 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15562: 61354-65636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_090 0.0 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
2 Hb_000120_320 0.0996717997 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_149055_010 0.1056552284 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
4 Hb_008175_050 0.1076309947 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
5 Hb_001138_070 0.1084463071 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_033772_060 0.1110657797 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000011_370 0.1135869825 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
8 Hb_022250_160 0.1144022102 - - respiratory burst oxidase A [Manihot esculenta]
9 Hb_004667_030 0.1153700281 - - hypothetical protein VITISV_034568 [Vitis vinifera]
10 Hb_003411_020 0.1176615504 - - alpha-glucosidase, putative [Ricinus communis]
11 Hb_007479_080 0.1183912104 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
12 Hb_008566_080 0.1184347326 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
13 Hb_000329_010 0.1203514238 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
14 Hb_007386_030 0.1211498423 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
15 Hb_001269_400 0.1238277245 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
16 Hb_003656_090 0.1248034965 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
17 Hb_004079_100 0.1255076405 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
18 Hb_031224_010 0.1257535073 - - -
19 Hb_001141_160 0.1264422072 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
20 Hb_000956_070 0.1307375281 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]

Gene co-expression network

sample Hb_001677_090 Hb_001677_090 Hb_000120_320 Hb_000120_320 Hb_001677_090--Hb_000120_320 Hb_149055_010 Hb_149055_010 Hb_001677_090--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001677_090--Hb_008175_050 Hb_001138_070 Hb_001138_070 Hb_001677_090--Hb_001138_070 Hb_033772_060 Hb_033772_060 Hb_001677_090--Hb_033772_060 Hb_000011_370 Hb_000011_370 Hb_001677_090--Hb_000011_370 Hb_000120_320--Hb_149055_010 Hb_000181_260 Hb_000181_260 Hb_000120_320--Hb_000181_260 Hb_002641_140 Hb_002641_140 Hb_000120_320--Hb_002641_140 Hb_019026_050 Hb_019026_050 Hb_000120_320--Hb_019026_050 Hb_000120_320--Hb_001138_070 Hb_001269_400 Hb_001269_400 Hb_149055_010--Hb_001269_400 Hb_149055_010--Hb_001138_070 Hb_000329_010 Hb_000329_010 Hb_149055_010--Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_149055_010--Hb_002809_080 Hb_000645_160 Hb_000645_160 Hb_149055_010--Hb_000645_160 Hb_003656_090 Hb_003656_090 Hb_008175_050--Hb_003656_090 Hb_008175_050--Hb_001138_070 Hb_007017_100 Hb_007017_100 Hb_008175_050--Hb_007017_100 Hb_005731_070 Hb_005731_070 Hb_008175_050--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_008175_050--Hb_007386_030 Hb_015001_030 Hb_015001_030 Hb_008175_050--Hb_015001_030 Hb_001138_070--Hb_000645_160 Hb_001138_070--Hb_003656_090 Hb_001138_070--Hb_000329_010 Hb_001138_070--Hb_002641_140 Hb_007894_080 Hb_007894_080 Hb_033772_060--Hb_007894_080 Hb_000152_880 Hb_000152_880 Hb_033772_060--Hb_000152_880 Hb_029639_030 Hb_029639_030 Hb_033772_060--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_033772_060--Hb_000181_220 Hb_093218_010 Hb_093218_010 Hb_033772_060--Hb_093218_010 Hb_005892_040 Hb_005892_040 Hb_033772_060--Hb_005892_040 Hb_000011_370--Hb_005731_070 Hb_000749_120 Hb_000749_120 Hb_000011_370--Hb_000749_120 Hb_008566_080 Hb_008566_080 Hb_000011_370--Hb_008566_080 Hb_000714_060 Hb_000714_060 Hb_000011_370--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_000011_370--Hb_000014_080 Hb_001597_030 Hb_001597_030 Hb_000011_370--Hb_001597_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.082242 2.77022 5.20287 11.5638 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.333014 0 5.97343 5.01668

CAGE analysis