Hb_001677_120

Information

Type -
Description -
Location Contig1677: 82677-84997
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10610g
description hypothetical protein
nr
ID XP_012091373.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID U5FZG7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10610g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_120 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_002375_080 0.0875852021 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001821_050 0.0911117241 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
4 Hb_007007_090 0.0913111053 - - phospholipase d beta, putative [Ricinus communis]
5 Hb_006573_280 0.0935766133 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
6 Hb_004724_300 0.0958846616 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
7 Hb_004945_050 0.0968324163 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
8 Hb_007102_010 0.0985250262 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
9 Hb_002097_210 0.1002966293 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004112_050 0.1127658551 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000325_070 0.1157316125 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_008550_030 0.1207615731 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
13 Hb_001046_040 0.1217252345 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_027474_010 0.1245014304 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
15 Hb_113396_010 0.1247048304 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000027_060 0.1251065896 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
17 Hb_001248_170 0.1264942644 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
18 Hb_000567_110 0.1280662535 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
19 Hb_004837_110 0.1307607726 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
20 Hb_001534_150 0.130896686 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]

Gene co-expression network

sample Hb_001677_120 Hb_001677_120 Hb_002375_080 Hb_002375_080 Hb_001677_120--Hb_002375_080 Hb_001821_050 Hb_001821_050 Hb_001677_120--Hb_001821_050 Hb_007007_090 Hb_007007_090 Hb_001677_120--Hb_007007_090 Hb_006573_280 Hb_006573_280 Hb_001677_120--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_001677_120--Hb_004724_300 Hb_004945_050 Hb_004945_050 Hb_001677_120--Hb_004945_050 Hb_002375_080--Hb_007007_090 Hb_007102_010 Hb_007102_010 Hb_002375_080--Hb_007102_010 Hb_004837_110 Hb_004837_110 Hb_002375_080--Hb_004837_110 Hb_002375_080--Hb_001821_050 Hb_002097_130 Hb_002097_130 Hb_002375_080--Hb_002097_130 Hb_001821_050--Hb_004724_300 Hb_001821_050--Hb_007102_010 Hb_134022_010 Hb_134022_010 Hb_001821_050--Hb_134022_010 Hb_001821_050--Hb_004837_110 Hb_001248_170 Hb_001248_170 Hb_007007_090--Hb_001248_170 Hb_000589_330 Hb_000589_330 Hb_007007_090--Hb_000589_330 Hb_007007_090--Hb_006573_280 Hb_003562_040 Hb_003562_040 Hb_007007_090--Hb_003562_040 Hb_000054_140 Hb_000054_140 Hb_006573_280--Hb_000054_140 Hb_002370_060 Hb_002370_060 Hb_006573_280--Hb_002370_060 Hb_006573_280--Hb_001248_170 Hb_004112_050 Hb_004112_050 Hb_006573_280--Hb_004112_050 Hb_000836_220 Hb_000836_220 Hb_006573_280--Hb_000836_220 Hb_004724_300--Hb_134022_010 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_004724_300--Hb_007102_010 Hb_004724_300--Hb_004112_050 Hb_000060_100 Hb_000060_100 Hb_004945_050--Hb_000060_100 Hb_008550_030 Hb_008550_030 Hb_004945_050--Hb_008550_030 Hb_002341_040 Hb_002341_040 Hb_004945_050--Hb_002341_040 Hb_000325_070 Hb_000325_070 Hb_004945_050--Hb_000325_070 Hb_000027_060 Hb_000027_060 Hb_004945_050--Hb_000027_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0164945 1.77547 0.479779 0.803907 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.177733 0.553413

CAGE analysis