Hb_001677_170

Information

Type -
Description -
Location Contig1677: 178433-180138
Sequence    

Annotation

kegg
ID cmo:103490932
description LRR receptor-like serine/threonine-protein kinase GSO2
nr
ID EPS71094.1
description hypothetical protein M569_03661, partial [Genlisea aurea]
swissprot
ID Q9M8T0
description Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1
trembl
ID S8CUP6
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_03661 PE=4 SV=1
Gene Ontology
ID GO:0016772
description receptor like protein 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15567: 178852-179688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_170 0.0 - - hypothetical protein M569_03661, partial [Genlisea aurea]
2 Hb_001926_070 0.0756981317 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
3 Hb_111997_010 0.076682359 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
4 Hb_000343_050 0.0772240116 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000031_320 0.0817714707 - - unnamed protein product [Vitis vinifera]
6 Hb_006188_020 0.0896775787 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
7 Hb_001606_010 0.0955817458 - - kinase, putative [Ricinus communis]
8 Hb_005890_010 0.0981088428 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
9 Hb_002284_160 0.1006006406 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
10 Hb_004017_030 0.1008469923 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
11 Hb_018134_010 0.1009621955 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
12 Hb_010136_010 0.1043162234 - - Putative receptor-like protein kinase [Glycine soja]
13 Hb_003654_020 0.1073126087 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_001115_070 0.1073584224 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
15 Hb_004117_380 0.1085135928 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
16 Hb_000732_300 0.1118738632 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
17 Hb_000186_180 0.1119870054 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
18 Hb_074966_010 0.1136246433 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
19 Hb_008019_010 0.1139910018 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
20 Hb_032731_010 0.1145940587 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001677_170 Hb_001677_170 Hb_001926_070 Hb_001926_070 Hb_001677_170--Hb_001926_070 Hb_111997_010 Hb_111997_010 Hb_001677_170--Hb_111997_010 Hb_000343_050 Hb_000343_050 Hb_001677_170--Hb_000343_050 Hb_000031_320 Hb_000031_320 Hb_001677_170--Hb_000031_320 Hb_006188_020 Hb_006188_020 Hb_001677_170--Hb_006188_020 Hb_001606_010 Hb_001606_010 Hb_001677_170--Hb_001606_010 Hb_001926_070--Hb_001606_010 Hb_000007_330 Hb_000007_330 Hb_001926_070--Hb_000007_330 Hb_032731_010 Hb_032731_010 Hb_001926_070--Hb_032731_010 Hb_000890_170 Hb_000890_170 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010 Hb_074966_010 Hb_074966_010 Hb_111997_010--Hb_074966_010 Hb_111997_010--Hb_006188_020 Hb_111997_010--Hb_001606_010 Hb_059318_010 Hb_059318_010 Hb_111997_010--Hb_059318_010 Hb_111997_010--Hb_001926_070 Hb_000343_050--Hb_006188_020 Hb_005890_010 Hb_005890_010 Hb_000343_050--Hb_005890_010 Hb_000343_050--Hb_001926_070 Hb_000343_050--Hb_032731_010 Hb_000343_050--Hb_111997_010 Hb_046739_010 Hb_046739_010 Hb_000031_320--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_000031_320--Hb_011028_030 Hb_002407_090 Hb_002407_090 Hb_000031_320--Hb_002407_090 Hb_002818_160 Hb_002818_160 Hb_000031_320--Hb_002818_160 Hb_003970_010 Hb_003970_010 Hb_000031_320--Hb_003970_010 Hb_006188_020--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_006188_020--Hb_001926_020 Hb_005888_050 Hb_005888_050 Hb_006188_020--Hb_005888_050 Hb_001606_010--Hb_000890_170 Hb_001352_030 Hb_001352_030 Hb_001606_010--Hb_001352_030 Hb_000486_020 Hb_000486_020 Hb_001606_010--Hb_000486_020 Hb_001606_010--Hb_032731_010 Hb_003531_050 Hb_003531_050 Hb_001606_010--Hb_003531_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.91502 4.23338 1.88109 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.122418 3.55917

CAGE analysis