Hb_001677_190

Information

Type -
Description -
Location Contig1677: 192697-198343
Sequence    

Annotation

kegg
ID rcu:RCOM_0823390
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002525837.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q8RXN0
description ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1
trembl
ID B9SIL8
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0823390 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_190 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_001856_130 0.1098179188 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
3 Hb_002597_030 0.1098988781 - - -
4 Hb_029576_070 0.1174998449 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
5 Hb_000120_600 0.1292567661 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
6 Hb_011355_020 0.1308812653 - - extensin, proline-rich protein, putative [Ricinus communis]
7 Hb_036029_020 0.1330272636 - - PREDICTED: patellin-3-like [Jatropha curcas]
8 Hb_001417_090 0.1337292095 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
9 Hb_000739_190 0.1337730036 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_004970_100 0.1378238895 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
11 Hb_153180_010 0.1389014395 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
12 Hb_000139_050 0.1396030524 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
13 Hb_001675_290 0.1401160221 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
14 Hb_077694_020 0.1429807474 - - SAUR family protein [Theobroma cacao]
15 Hb_004031_050 0.1449448036 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
16 Hb_030827_080 0.1464104019 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
17 Hb_000000_320 0.1482323588 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
18 Hb_004531_130 0.1493524638 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
19 Hb_000742_290 0.1496426146 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_006026_020 0.1503984941 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]

Gene co-expression network

sample Hb_001677_190 Hb_001677_190 Hb_001856_130 Hb_001856_130 Hb_001677_190--Hb_001856_130 Hb_002597_030 Hb_002597_030 Hb_001677_190--Hb_002597_030 Hb_029576_070 Hb_029576_070 Hb_001677_190--Hb_029576_070 Hb_000120_600 Hb_000120_600 Hb_001677_190--Hb_000120_600 Hb_011355_020 Hb_011355_020 Hb_001677_190--Hb_011355_020 Hb_036029_020 Hb_036029_020 Hb_001677_190--Hb_036029_020 Hb_001856_130--Hb_000120_600 Hb_153180_010 Hb_153180_010 Hb_001856_130--Hb_153180_010 Hb_001417_090 Hb_001417_090 Hb_001856_130--Hb_001417_090 Hb_120040_010 Hb_120040_010 Hb_001856_130--Hb_120040_010 Hb_001953_010 Hb_001953_010 Hb_001856_130--Hb_001953_010 Hb_000000_320 Hb_000000_320 Hb_001856_130--Hb_000000_320 Hb_002597_030--Hb_029576_070 Hb_017549_010 Hb_017549_010 Hb_002597_030--Hb_017549_010 Hb_002597_030--Hb_000120_600 Hb_002597_030--Hb_001856_130 Hb_002597_030--Hb_036029_020 Hb_029576_070--Hb_017549_010 Hb_029576_070--Hb_000120_600 Hb_029576_070--Hb_001856_130 Hb_029576_070--Hb_011355_020 Hb_002804_070 Hb_002804_070 Hb_000120_600--Hb_002804_070 Hb_000120_600--Hb_001953_010 Hb_000120_600--Hb_017549_010 Hb_004374_170 Hb_004374_170 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070 Hb_002897_030 Hb_002897_030 Hb_011355_020--Hb_002897_030 Hb_006026_020 Hb_006026_020 Hb_011355_020--Hb_006026_020 Hb_004031_050 Hb_004031_050 Hb_011355_020--Hb_004031_050 Hb_001198_180 Hb_001198_180 Hb_011355_020--Hb_001198_180 Hb_005214_050 Hb_005214_050 Hb_011355_020--Hb_005214_050 Hb_000373_260 Hb_000373_260 Hb_011355_020--Hb_000373_260 Hb_071433_010 Hb_071433_010 Hb_036029_020--Hb_071433_010 Hb_001675_290 Hb_001675_290 Hb_036029_020--Hb_001675_290 Hb_007749_020 Hb_007749_020 Hb_036029_020--Hb_007749_020 Hb_000172_230 Hb_000172_230 Hb_036029_020--Hb_000172_230 Hb_004970_100 Hb_004970_100 Hb_036029_020--Hb_004970_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00850511 0.395666 0.480038 1.31398 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0289179 0.072458 0.0967146

CAGE analysis