Hb_001677_210

Information

Type -
Description -
Location Contig1677: 205676-209339
Sequence    

Annotation

kegg
ID pda:103716767
description transcription factor bHLH115-like
nr
ID KDP44874.1
description hypothetical protein JCGZ_01374 [Jatropha curcas]
swissprot
ID Q9C682
description Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1
trembl
ID A0A067LKL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01374 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15572: 208547-208737 , PASA_asmbl_15573: 209590-210060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_210 0.0 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
2 Hb_000808_270 0.0511169792 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
3 Hb_003766_040 0.0674717709 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000629_010 0.0680252089 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
5 Hb_006185_050 0.0692232546 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
6 Hb_008803_090 0.0694210965 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
7 Hb_000926_280 0.0708976708 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
8 Hb_003175_010 0.0718024696 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
9 Hb_005532_050 0.071969798 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_001595_030 0.0723546798 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
11 Hb_048937_040 0.0727050562 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000976_320 0.0735038538 - - UPF0061 protein azo1574 [Morus notabilis]
13 Hb_000030_300 0.0736578926 - - Thioredoxin, putative [Ricinus communis]
14 Hb_003464_050 0.0745151286 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
15 Hb_006827_020 0.0758139882 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001489_150 0.0758749028 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
17 Hb_000327_120 0.07608915 - - FGFR1 oncogene partner, putative [Ricinus communis]
18 Hb_001301_160 0.0768456048 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
19 Hb_001252_010 0.0771148076 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
20 Hb_007951_060 0.0771493812 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001677_210 Hb_001677_210 Hb_000808_270 Hb_000808_270 Hb_001677_210--Hb_000808_270 Hb_003766_040 Hb_003766_040 Hb_001677_210--Hb_003766_040 Hb_000629_010 Hb_000629_010 Hb_001677_210--Hb_000629_010 Hb_006185_050 Hb_006185_050 Hb_001677_210--Hb_006185_050 Hb_008803_090 Hb_008803_090 Hb_001677_210--Hb_008803_090 Hb_000926_280 Hb_000926_280 Hb_001677_210--Hb_000926_280 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_003175_010 Hb_003175_010 Hb_000808_270--Hb_003175_010 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_000808_270--Hb_000629_010 Hb_003766_040--Hb_003175_010 Hb_003766_040--Hb_000808_270 Hb_003766_040--Hb_000926_280 Hb_001489_150 Hb_001489_150 Hb_003766_040--Hb_001489_150 Hb_007416_280 Hb_007416_280 Hb_003766_040--Hb_007416_280 Hb_002026_180 Hb_002026_180 Hb_003766_040--Hb_002026_180 Hb_000030_300 Hb_000030_300 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_004355_020 Hb_004355_020 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000089_220 Hb_000089_220 Hb_006185_050--Hb_000089_220 Hb_000327_120 Hb_000327_120 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_006185_050--Hb_003175_010 Hb_106552_050 Hb_106552_050 Hb_008803_090--Hb_106552_050 Hb_001926_030 Hb_001926_030 Hb_008803_090--Hb_001926_030 Hb_001635_170 Hb_001635_170 Hb_008803_090--Hb_001635_170 Hb_008803_090--Hb_001595_030 Hb_005532_050 Hb_005532_050 Hb_008803_090--Hb_005532_050 Hb_000926_280--Hb_003175_010 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000926_280--Hb_000327_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.60744 3.33784 2.76178 2.38079 4.90646 6.58931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.02478 4.46285 4.44784 3.27475 1.19902

CAGE analysis