Hb_001677_230

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1677: 225712-229454
Sequence    

Annotation

kegg
ID rcu:RCOM_1482450
description hypothetical protein
nr
ID XP_002524239.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W3K3
description Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1
trembl
ID B9SE20
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1482450 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance protein rpp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15578: 223118-224761 , PASA_asmbl_15579: 225644-225801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_230 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_002888_060 0.1113938965 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
3 Hb_001619_010 0.1209812697 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
4 Hb_082683_010 0.1271134954 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
5 Hb_001963_110 0.1317886522 - - -
6 Hb_006096_020 0.1380631086 - - Os06g0343500 [Oryza sativa Japonica Group]
7 Hb_033594_100 0.1423315644 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000816_020 0.144470697 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
9 Hb_002420_010 0.1480689561 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_005016_120 0.1498266704 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
11 Hb_000264_340 0.158476292 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
12 Hb_000875_070 0.1602381053 - - -
13 Hb_000215_250 0.16252572 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
14 Hb_002217_390 0.1661556531 - - PREDICTED: galactokinase [Jatropha curcas]
15 Hb_002003_040 0.1679880831 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
16 Hb_011853_010 0.1706875741 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
17 Hb_001268_300 0.170892998 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001496_120 0.170945189 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
19 Hb_002518_180 0.1711438164 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
20 Hb_012023_010 0.1720114939 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001677_230 Hb_001677_230 Hb_002888_060 Hb_002888_060 Hb_001677_230--Hb_002888_060 Hb_001619_010 Hb_001619_010 Hb_001677_230--Hb_001619_010 Hb_082683_010 Hb_082683_010 Hb_001677_230--Hb_082683_010 Hb_001963_110 Hb_001963_110 Hb_001677_230--Hb_001963_110 Hb_006096_020 Hb_006096_020 Hb_001677_230--Hb_006096_020 Hb_033594_100 Hb_033594_100 Hb_001677_230--Hb_033594_100 Hb_001141_040 Hb_001141_040 Hb_002888_060--Hb_001141_040 Hb_000191_100 Hb_000191_100 Hb_002888_060--Hb_000191_100 Hb_001496_120 Hb_001496_120 Hb_002888_060--Hb_001496_120 Hb_002888_060--Hb_001963_110 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300 Hb_010812_140 Hb_010812_140 Hb_001619_010--Hb_010812_140 Hb_012023_010 Hb_012023_010 Hb_001619_010--Hb_012023_010 Hb_005016_120 Hb_005016_120 Hb_001619_010--Hb_005016_120 Hb_001619_010--Hb_006096_020 Hb_001619_010--Hb_001963_110 Hb_002420_010 Hb_002420_010 Hb_082683_010--Hb_002420_010 Hb_082683_010--Hb_001268_300 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040 Hb_000442_170 Hb_000442_170 Hb_001963_110--Hb_000442_170 Hb_002308_060 Hb_002308_060 Hb_001963_110--Hb_002308_060 Hb_003992_220 Hb_003992_220 Hb_001963_110--Hb_003992_220 Hb_000776_020 Hb_000776_020 Hb_001963_110--Hb_000776_020 Hb_006096_020--Hb_000816_020 Hb_006096_020--Hb_012023_010 Hb_006096_020--Hb_082683_010 Hb_000059_080 Hb_000059_080 Hb_006096_020--Hb_000059_080 Hb_002518_180 Hb_002518_180 Hb_033594_100--Hb_002518_180 Hb_011853_010 Hb_011853_010 Hb_033594_100--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_033594_100--Hb_001040_150 Hb_101449_010 Hb_101449_010 Hb_033594_100--Hb_101449_010 Hb_033594_100--Hb_082683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129833 1.44586 0.52291 1.07092 0.0579157 0.250265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0450444 0.0945235 0.0903581 2.92483 2.94772

CAGE analysis