Hb_001679_050

Information

Type -
Description -
Location Contig1679: 102261-123774
Sequence    

Annotation

kegg
ID rcu:RCOM_1556250
description hypothetical protein
nr
ID XP_012076084.1
description PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
swissprot
ID Q9LTB0
description Exocyst complex component EXO84B OS=Arabidopsis thaliana GN=EXO84B PE=1 SV=1
trembl
ID A0A067KDZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11922 PE=4 SV=1
Gene Ontology
ID GO:0005829
description exocyst complex component exo84b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15589: 102611-123860 , PASA_asmbl_15590: 119950-120199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001679_050 0.0 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
2 Hb_002989_020 0.0545207057 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
3 Hb_011063_050 0.0545438948 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
4 Hb_000340_530 0.0574163781 - - hypothetical protein VITISV_016664 [Vitis vinifera]
5 Hb_004990_010 0.0642475908 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
6 Hb_008279_040 0.0691988561 - - Rer1 family protein isoform 2 [Theobroma cacao]
7 Hb_000574_450 0.0695158624 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
8 Hb_010142_020 0.0697124004 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004109_080 0.0703675642 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
10 Hb_001473_160 0.0721176609 - - Vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_000487_270 0.0722779342 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
12 Hb_012498_010 0.0727811024 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
13 Hb_010515_020 0.072838152 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
14 Hb_000072_120 0.0730410659 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_003683_020 0.0739592167 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_093458_040 0.0741234014 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
17 Hb_000923_010 0.0747726365 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
18 Hb_002728_080 0.0755468698 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_007894_110 0.0763526966 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
20 Hb_000208_280 0.0765281772 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]

Gene co-expression network

sample Hb_001679_050 Hb_001679_050 Hb_002989_020 Hb_002989_020 Hb_001679_050--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_001679_050--Hb_011063_050 Hb_000340_530 Hb_000340_530 Hb_001679_050--Hb_000340_530 Hb_004990_010 Hb_004990_010 Hb_001679_050--Hb_004990_010 Hb_008279_040 Hb_008279_040 Hb_001679_050--Hb_008279_040 Hb_000574_450 Hb_000574_450 Hb_001679_050--Hb_000574_450 Hb_002989_020--Hb_000340_530 Hb_002989_020--Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_002989_020--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_002989_020--Hb_093458_040 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_011063_050--Hb_010142_020 Hb_011063_050--Hb_000340_530 Hb_011063_050--Hb_093458_040 Hb_010515_020 Hb_010515_020 Hb_011063_050--Hb_010515_020 Hb_000340_530--Hb_093458_040 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_000260_350 Hb_000260_350 Hb_004990_010--Hb_000260_350 Hb_004990_010--Hb_093458_040 Hb_004990_010--Hb_002989_020 Hb_000487_270 Hb_000487_270 Hb_004990_010--Hb_000487_270 Hb_013399_020 Hb_013399_020 Hb_004990_010--Hb_013399_020 Hb_000948_230 Hb_000948_230 Hb_004990_010--Hb_000948_230 Hb_001259_050 Hb_001259_050 Hb_008279_040--Hb_001259_050 Hb_003607_130 Hb_003607_130 Hb_008279_040--Hb_003607_130 Hb_008279_040--Hb_000487_270 Hb_008279_040--Hb_010515_020 Hb_002071_070 Hb_002071_070 Hb_008279_040--Hb_002071_070 Hb_029243_030 Hb_029243_030 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000574_450--Hb_000487_270 Hb_000574_450--Hb_010515_020 Hb_006452_120 Hb_006452_120 Hb_000574_450--Hb_006452_120 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1295 16.0214 12.1007 22.0447 14.8248 14.7367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.10385 14.9351 17.6533 16.3758 14.4846

CAGE analysis