Hb_001680_010

Information

Type -
Description -
Location Contig1680: 8132-17083
Sequence    

Annotation

kegg
ID rcu:RCOM_0602280
description Serine/threonine-protein kinase SAPK10, putative (EC:2.7.11.1)
nr
ID XP_003629567.1
description Serine/threonine protein kinase SAPK3 [Medicago truncatula]
swissprot
ID Q39193
description Serine/threonine-protein kinase SRK2I OS=Arabidopsis thaliana GN=SRK2I PE=1 SV=1
trembl
ID G7LGB9
description Sucrose nonfermenting 1(SNF1)-related kinase OS=Medicago truncatula GN=MTR_8g079560 PE=2 SV=1
Gene Ontology
ID GO:0005634
description serine threonine-protein kinase srk2e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15595: 10403-16642 , PASA_asmbl_15596: 10403-16642 , PASA_asmbl_15598: 15588-16025 , PASA_asmbl_15600: 12177-14396 , PASA_asmbl_15602: 16938-17109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001680_010 0.0 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
2 Hb_005993_020 0.0338771999 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
3 Hb_005532_050 0.0554861723 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
4 Hb_002131_020 0.0568594565 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
5 Hb_001301_200 0.0582204841 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
6 Hb_002835_370 0.0598149879 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
7 Hb_001541_020 0.0684847183 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
8 Hb_123352_020 0.0708362611 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
9 Hb_011671_430 0.0709155962 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
10 Hb_000107_500 0.0739642864 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
11 Hb_004724_200 0.0741029726 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
12 Hb_001595_030 0.0747071549 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
13 Hb_009627_010 0.0748840898 - - Protein dom-3, putative [Ricinus communis]
14 Hb_006922_100 0.0752959746 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
15 Hb_001797_050 0.0755741829 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
16 Hb_000244_250 0.0756620526 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
17 Hb_000630_050 0.0756712575 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003362_040 0.0759674212 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
19 Hb_004724_060 0.0763536332 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
20 Hb_001143_160 0.0778326492 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001680_010 Hb_001680_010 Hb_005993_020 Hb_005993_020 Hb_001680_010--Hb_005993_020 Hb_005532_050 Hb_005532_050 Hb_001680_010--Hb_005532_050 Hb_002131_020 Hb_002131_020 Hb_001680_010--Hb_002131_020 Hb_001301_200 Hb_001301_200 Hb_001680_010--Hb_001301_200 Hb_002835_370 Hb_002835_370 Hb_001680_010--Hb_002835_370 Hb_001541_020 Hb_001541_020 Hb_001680_010--Hb_001541_020 Hb_005993_020--Hb_002131_020 Hb_005993_020--Hb_001301_200 Hb_011671_430 Hb_011671_430 Hb_005993_020--Hb_011671_430 Hb_005993_020--Hb_005532_050 Hb_000630_050 Hb_000630_050 Hb_005993_020--Hb_000630_050 Hb_003464_050 Hb_003464_050 Hb_005532_050--Hb_003464_050 Hb_005532_050--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_005532_050--Hb_001797_050 Hb_008803_090 Hb_008803_090 Hb_005532_050--Hb_008803_090 Hb_005532_050--Hb_001541_020 Hb_000983_150 Hb_000983_150 Hb_002131_020--Hb_000983_150 Hb_002131_020--Hb_002835_370 Hb_010931_120 Hb_010931_120 Hb_002131_020--Hb_010931_120 Hb_009627_010 Hb_009627_010 Hb_002131_020--Hb_009627_010 Hb_007163_090 Hb_007163_090 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_004221_020 Hb_004221_020 Hb_002835_370--Hb_004221_020 Hb_002025_020 Hb_002025_020 Hb_002835_370--Hb_002025_020 Hb_000072_220 Hb_000072_220 Hb_002835_370--Hb_000072_220 Hb_009548_020 Hb_009548_020 Hb_002835_370--Hb_009548_020 Hb_028089_010 Hb_028089_010 Hb_002835_370--Hb_028089_010 Hb_022408_010 Hb_022408_010 Hb_001541_020--Hb_022408_010 Hb_000107_500 Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_000244_250 Hb_000244_250 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4374 17.6058 9.98507 12.5157 26.1426 26.8528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7609 13.306 23.6011 13.958 10.6576

CAGE analysis