Hb_001682_020

Information

Type -
Description -
Location Contig1682: 29517-31804
Sequence    

Annotation

kegg
ID rcu:RCOM_1590900
description hypothetical protein
nr
ID XP_012065146.1
description PREDICTED: uncharacterized protein LOC105628366 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7B2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05744 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001682_020 0.0 - - PREDICTED: uncharacterized protein LOC105628366 [Jatropha curcas]
2 Hb_002375_030 0.0784094952 - - F-box family protein [Populus trichocarpa]
3 Hb_003025_160 0.0896454286 - - Protein HVA22, putative [Ricinus communis]
4 Hb_000049_100 0.0937937514 - - Photosystem II reaction center W protein, putative [Ricinus communis]
5 Hb_008225_050 0.0957678989 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
6 Hb_004970_060 0.0961034138 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
7 Hb_000254_130 0.0992770263 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
8 Hb_007537_040 0.100462097 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
9 Hb_000369_110 0.1005990043 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_001277_130 0.1026017795 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
11 Hb_002121_050 0.1027762932 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
12 Hb_002752_020 0.1046719277 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
13 Hb_033363_040 0.1047287608 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
14 Hb_006970_030 0.1055075044 - - synaptotagmin, putative [Ricinus communis]
15 Hb_001999_230 0.1064872096 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
16 Hb_003623_080 0.1068332269 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
17 Hb_002259_090 0.1095862323 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
18 Hb_001975_100 0.1097165915 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
19 Hb_008195_070 0.1098163034 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_001141_100 0.1107241656 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001682_020 Hb_001682_020 Hb_002375_030 Hb_002375_030 Hb_001682_020--Hb_002375_030 Hb_003025_160 Hb_003025_160 Hb_001682_020--Hb_003025_160 Hb_000049_100 Hb_000049_100 Hb_001682_020--Hb_000049_100 Hb_008225_050 Hb_008225_050 Hb_001682_020--Hb_008225_050 Hb_004970_060 Hb_004970_060 Hb_001682_020--Hb_004970_060 Hb_000254_130 Hb_000254_130 Hb_001682_020--Hb_000254_130 Hb_008195_070 Hb_008195_070 Hb_002375_030--Hb_008195_070 Hb_001006_040 Hb_001006_040 Hb_002375_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002375_030--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_002375_030--Hb_001975_100 Hb_002375_030--Hb_000254_130 Hb_002375_030--Hb_000049_100 Hb_003025_160--Hb_008225_050 Hb_003025_160--Hb_000254_130 Hb_003025_160--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_003025_160--Hb_002259_090 Hb_007537_040 Hb_007537_040 Hb_003025_160--Hb_007537_040 Hb_001999_230 Hb_001999_230 Hb_003025_160--Hb_001999_230 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000049_100--Hb_000254_130 Hb_003120_020 Hb_003120_020 Hb_000049_100--Hb_003120_020 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_010326_020 Hb_010326_020 Hb_000049_100--Hb_010326_020 Hb_008225_050--Hb_007537_040 Hb_008225_050--Hb_000254_130 Hb_002752_020 Hb_002752_020 Hb_008225_050--Hb_002752_020 Hb_008225_050--Hb_004970_060 Hb_008225_050--Hb_001975_100 Hb_004970_060--Hb_007537_040 Hb_004970_060--Hb_000254_130 Hb_004970_060--Hb_001999_230 Hb_153258_040 Hb_153258_040 Hb_004970_060--Hb_153258_040 Hb_000254_130--Hb_001975_100 Hb_000254_130--Hb_001999_230 Hb_005063_030 Hb_005063_030 Hb_000254_130--Hb_005063_030 Hb_000254_130--Hb_002752_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0548329 0.186303 2.17621 1.3809 0.025676 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0461597 0.0490342 3.34094

CAGE analysis