Hb_001688_020

Information

Type -
Description -
Location Contig1688: 46218-53318
Sequence    

Annotation

kegg
ID mdm:103438026
description uncharacterized LOC103438026
nr
ID XP_008374786.1
description PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
swissprot
ID -
description -
trembl
ID B9SFX0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724570 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s24 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15632: 47579-47705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001688_020 0.0 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
2 Hb_003097_210 0.080842996 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
3 Hb_010080_090 0.0989483139 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
4 Hb_181600_010 0.1002178491 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
5 Hb_000010_470 0.1031310154 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
6 Hb_155764_010 0.1056590452 - - -
7 Hb_000317_410 0.1059552266 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
8 Hb_001832_010 0.10785397 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
9 Hb_000010_460 0.1105863614 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
10 Hb_003226_280 0.1132055993 - - PREDICTED: peter Pan-like protein [Populus euphratica]
11 Hb_000220_050 0.1142359096 transcription factor TF Family: Orphans PREDICTED: putative zinc finger protein At1g68190 isoform X1 [Jatropha curcas]
12 Hb_004678_050 0.1150313339 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
13 Hb_000865_070 0.1161744226 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
14 Hb_001360_050 0.11805918 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
15 Hb_003408_020 0.119055702 - - hypothetical protein RCOM_0453040 [Ricinus communis]
16 Hb_003175_040 0.1191130349 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
17 Hb_148200_010 0.119617777 - - hypothetical protein 33 [Hevea brasiliensis]
18 Hb_000834_270 0.1211835965 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
19 Hb_003020_230 0.121888922 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
20 Hb_010560_040 0.1235009318 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001688_020 Hb_001688_020 Hb_003097_210 Hb_003097_210 Hb_001688_020--Hb_003097_210 Hb_010080_090 Hb_010080_090 Hb_001688_020--Hb_010080_090 Hb_181600_010 Hb_181600_010 Hb_001688_020--Hb_181600_010 Hb_000010_470 Hb_000010_470 Hb_001688_020--Hb_000010_470 Hb_155764_010 Hb_155764_010 Hb_001688_020--Hb_155764_010 Hb_000317_410 Hb_000317_410 Hb_001688_020--Hb_000317_410 Hb_003097_210--Hb_155764_010 Hb_010560_040 Hb_010560_040 Hb_003097_210--Hb_010560_040 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003097_210--Hb_000865_070 Hb_012675_060 Hb_012675_060 Hb_010080_090--Hb_012675_060 Hb_000834_270 Hb_000834_270 Hb_010080_090--Hb_000834_270 Hb_004724_340 Hb_004724_340 Hb_010080_090--Hb_004724_340 Hb_002963_010 Hb_002963_010 Hb_010080_090--Hb_002963_010 Hb_004586_320 Hb_004586_320 Hb_010080_090--Hb_004586_320 Hb_001360_050 Hb_001360_050 Hb_010080_090--Hb_001360_050 Hb_048476_050 Hb_048476_050 Hb_181600_010--Hb_048476_050 Hb_181600_010--Hb_003097_210 Hb_001545_080 Hb_001545_080 Hb_181600_010--Hb_001545_080 Hb_181600_010--Hb_155764_010 Hb_000260_810 Hb_000260_810 Hb_181600_010--Hb_000260_810 Hb_148209_110 Hb_148209_110 Hb_000010_470--Hb_148209_110 Hb_000010_470--Hb_155764_010 Hb_000010_460 Hb_000010_460 Hb_000010_470--Hb_000010_460 Hb_002216_040 Hb_002216_040 Hb_000010_470--Hb_002216_040 Hb_004678_050 Hb_004678_050 Hb_000010_470--Hb_004678_050 Hb_006400_030 Hb_006400_030 Hb_000010_470--Hb_006400_030 Hb_116898_010 Hb_116898_010 Hb_155764_010--Hb_116898_010 Hb_027073_040 Hb_027073_040 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_002333_080 Hb_002333_080 Hb_000317_410--Hb_002333_080 Hb_001824_010 Hb_001824_010 Hb_000317_410--Hb_001824_010 Hb_000317_410--Hb_181600_010 Hb_000318_100 Hb_000318_100 Hb_000317_410--Hb_000318_100 Hb_000329_650 Hb_000329_650 Hb_000317_410--Hb_000329_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92006 0.496058 0.84974 0.474988 1.35313 1.89605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.72133 3.713 2.75038 2.85019 0.988482

CAGE analysis