Hb_001688_030

Information

Type -
Description -
Location Contig1688: 55097-55423
Sequence    

Annotation

kegg
ID pmum:103338831
description uncharacterized LOC103338831
nr
ID KDP35182.1
description hypothetical protein JCGZ_10716 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10716 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15633: 54846-55560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001688_030 0.0 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
2 Hb_008021_050 0.0880685558 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000093_010 0.0888037274 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
4 Hb_154038_040 0.104820673 - - nutrient reservoir, putative [Ricinus communis]
5 Hb_001360_020 0.1063995058 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
6 Hb_002384_030 0.1082675189 - - conserved hypothetical protein [Ricinus communis]
7 Hb_133492_010 0.108493957 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001936_120 0.1098497715 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
9 Hb_003607_080 0.1124176287 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
10 Hb_000457_120 0.1127879427 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
11 Hb_008731_010 0.1180575786 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
12 Hb_006154_010 0.1183703032 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
13 Hb_000864_050 0.1188756042 - - zinc finger protein, putative [Ricinus communis]
14 Hb_068804_180 0.119754488 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
15 Hb_003466_010 0.1213701096 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
16 Hb_180980_010 0.122237261 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
17 Hb_029791_010 0.1222565457 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
18 Hb_000137_050 0.1243614435 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000928_200 0.1251630365 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
20 Hb_007659_050 0.125921986 - - PREDICTED: xylogen-like protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001688_030 Hb_001688_030 Hb_008021_050 Hb_008021_050 Hb_001688_030--Hb_008021_050 Hb_000093_010 Hb_000093_010 Hb_001688_030--Hb_000093_010 Hb_154038_040 Hb_154038_040 Hb_001688_030--Hb_154038_040 Hb_001360_020 Hb_001360_020 Hb_001688_030--Hb_001360_020 Hb_002384_030 Hb_002384_030 Hb_001688_030--Hb_002384_030 Hb_133492_010 Hb_133492_010 Hb_001688_030--Hb_133492_010 Hb_003607_080 Hb_003607_080 Hb_008021_050--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_008021_050--Hb_003466_010 Hb_008021_050--Hb_000093_010 Hb_120040_010 Hb_120040_010 Hb_008021_050--Hb_120040_010 Hb_007919_010 Hb_007919_010 Hb_008021_050--Hb_007919_010 Hb_000093_010--Hb_003607_080 Hb_000093_010--Hb_003466_010 Hb_005648_020 Hb_005648_020 Hb_000093_010--Hb_005648_020 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_001117_180 Hb_001117_180 Hb_154038_040--Hb_001117_180 Hb_000028_550 Hb_000028_550 Hb_154038_040--Hb_000028_550 Hb_000384_020 Hb_000384_020 Hb_154038_040--Hb_000384_020 Hb_004558_060 Hb_004558_060 Hb_154038_040--Hb_004558_060 Hb_002518_020 Hb_002518_020 Hb_154038_040--Hb_002518_020 Hb_002000_100 Hb_002000_100 Hb_001360_020--Hb_002000_100 Hb_001360_020--Hb_002384_030 Hb_142056_010 Hb_142056_010 Hb_001360_020--Hb_142056_010 Hb_002007_330 Hb_002007_330 Hb_001360_020--Hb_002007_330 Hb_000453_290 Hb_000453_290 Hb_001360_020--Hb_000453_290 Hb_008731_010 Hb_008731_010 Hb_001360_020--Hb_008731_010 Hb_002384_030--Hb_008731_010 Hb_027405_010 Hb_027405_010 Hb_002384_030--Hb_027405_010 Hb_022693_090 Hb_022693_090 Hb_002384_030--Hb_022693_090 Hb_002384_030--Hb_002000_100 Hb_000344_030 Hb_000344_030 Hb_002384_030--Hb_000344_030 Hb_180980_010 Hb_180980_010 Hb_133492_010--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_133492_010--Hb_000864_050 Hb_004625_020 Hb_004625_020 Hb_133492_010--Hb_004625_020 Hb_002171_050 Hb_002171_050 Hb_133492_010--Hb_002171_050 Hb_004917_020 Hb_004917_020 Hb_133492_010--Hb_004917_020 Hb_029791_010 Hb_029791_010 Hb_133492_010--Hb_029791_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.65948 3.51149 21.4407 0 0.237984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.23919 0 1.73891 6.18954

CAGE analysis