Hb_001688_050

Information

Type -
Description -
Location Contig1688: 64824-66537
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05030g
description POPTRDRAFT_834272; reticulon family protein
nr
ID XP_012075462.1
description PREDICTED: reticulon-like protein B9 [Jatropha curcas]
swissprot
ID Q9LJQ5
description Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1
trembl
ID B9I2J5
description Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0012s05030g PE=4 SV=1
Gene Ontology
ID GO:0005739
description reticulon-like protein b9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15635: 64828-65920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001688_050 0.0 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
2 Hb_000103_440 0.0814783783 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
3 Hb_001289_070 0.084438901 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_015807_130 0.0858153378 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
5 Hb_003058_240 0.0868100581 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
6 Hb_000813_070 0.0868994158 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004650_110 0.0937227748 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
8 Hb_002151_070 0.0939524175 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
9 Hb_002925_060 0.0982052907 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
10 Hb_003152_020 0.1004870753 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
11 Hb_009252_070 0.1049577965 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
12 Hb_005711_030 0.1079858622 - - hypothetical protein RCOM_0460020 [Ricinus communis]
13 Hb_008461_060 0.1082463134 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
14 Hb_001140_290 0.1101496401 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
15 Hb_001408_200 0.1108052286 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
16 Hb_005000_150 0.1120144818 - - conserved hypothetical protein [Ricinus communis]
17 Hb_136408_040 0.1126386144 - - PREDICTED: protein NDR1 [Jatropha curcas]
18 Hb_000368_050 0.1126830722 - - beta-galactosidase, putative [Ricinus communis]
19 Hb_000402_060 0.1134756369 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
20 Hb_001514_050 0.1139483695 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]

Gene co-expression network

sample Hb_001688_050 Hb_001688_050 Hb_000103_440 Hb_000103_440 Hb_001688_050--Hb_000103_440 Hb_001289_070 Hb_001289_070 Hb_001688_050--Hb_001289_070 Hb_015807_130 Hb_015807_130 Hb_001688_050--Hb_015807_130 Hb_003058_240 Hb_003058_240 Hb_001688_050--Hb_003058_240 Hb_000813_070 Hb_000813_070 Hb_001688_050--Hb_000813_070 Hb_004650_110 Hb_004650_110 Hb_001688_050--Hb_004650_110 Hb_000103_440--Hb_003058_240 Hb_001140_290 Hb_001140_290 Hb_000103_440--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_000103_440--Hb_002151_070 Hb_002809_180 Hb_002809_180 Hb_000103_440--Hb_002809_180 Hb_005711_030 Hb_005711_030 Hb_000103_440--Hb_005711_030 Hb_003152_020 Hb_003152_020 Hb_000103_440--Hb_003152_020 Hb_001289_070--Hb_005711_030 Hb_001289_070--Hb_015807_130 Hb_005000_150 Hb_005000_150 Hb_001289_070--Hb_005000_150 Hb_001289_070--Hb_003152_020 Hb_001289_070--Hb_000813_070 Hb_001289_070--Hb_002151_070 Hb_015807_130--Hb_003152_020 Hb_015807_130--Hb_002151_070 Hb_015807_130--Hb_001140_290 Hb_002081_020 Hb_002081_020 Hb_015807_130--Hb_002081_020 Hb_000402_060 Hb_000402_060 Hb_003058_240--Hb_000402_060 Hb_003058_240--Hb_001140_290 Hb_003058_240--Hb_002151_070 Hb_009476_080 Hb_009476_080 Hb_003058_240--Hb_009476_080 Hb_003058_240--Hb_002809_180 Hb_000813_070--Hb_005711_030 Hb_000813_070--Hb_002151_070 Hb_020375_010 Hb_020375_010 Hb_000813_070--Hb_020375_010 Hb_001279_400 Hb_001279_400 Hb_000813_070--Hb_001279_400 Hb_004650_110--Hb_002809_180 Hb_007163_110 Hb_007163_110 Hb_004650_110--Hb_007163_110 Hb_004650_110--Hb_003152_020 Hb_000017_180 Hb_000017_180 Hb_004650_110--Hb_000017_180 Hb_004650_110--Hb_001289_070 Hb_128986_010 Hb_128986_010 Hb_004650_110--Hb_128986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14041 0.592915 2.45459 12.9789 0.0988356 0.0934116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.162132 0 0 0.700147 10.5856

CAGE analysis