Hb_001688_100

Information

Type -
Description -
Location Contig1688: 97790-101848
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05060g
description POPTRDRAFT_772675; hypothetical protein
nr
ID XP_012075451.1
description PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
swissprot
ID Q8S950
description Kinesin-like protein NACK1 OS=Nicotiana tabacum GN=NACK1 PE=1 SV=1
trembl
ID A0A067KG34
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_10720 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein nack1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001688_100 0.0 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
2 Hb_000661_150 0.0949015109 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
3 Hb_101133_050 0.0960521343 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
4 Hb_080952_060 0.0989984827 - - PREDICTED: patellin-4 [Populus euphratica]
5 Hb_001307_150 0.1013735872 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_001699_270 0.1016313016 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
7 Hb_005276_090 0.1022514504 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
8 Hb_000480_060 0.1024939687 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
9 Hb_001584_360 0.1039061689 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
10 Hb_033041_010 0.1047742779 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
11 Hb_000334_120 0.1073646793 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
12 Hb_000085_360 0.1079259301 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
13 Hb_119044_040 0.1105444492 - - cyclin B, putative [Ricinus communis]
14 Hb_009113_060 0.1135287537 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000345_450 0.1149864341 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
16 Hb_003776_050 0.116345606 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
17 Hb_005183_150 0.1169787954 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
18 Hb_002374_090 0.1171149824 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
19 Hb_007632_080 0.1175410884 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
20 Hb_001998_180 0.1188087837 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001688_100 Hb_001688_100 Hb_000661_150 Hb_000661_150 Hb_001688_100--Hb_000661_150 Hb_101133_050 Hb_101133_050 Hb_001688_100--Hb_101133_050 Hb_080952_060 Hb_080952_060 Hb_001688_100--Hb_080952_060 Hb_001307_150 Hb_001307_150 Hb_001688_100--Hb_001307_150 Hb_001699_270 Hb_001699_270 Hb_001688_100--Hb_001699_270 Hb_005276_090 Hb_005276_090 Hb_001688_100--Hb_005276_090 Hb_000661_150--Hb_001699_270 Hb_000661_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000661_150--Hb_001950_090 Hb_000418_040 Hb_000418_040 Hb_000661_150--Hb_000418_040 Hb_000661_150--Hb_001307_150 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_101133_050--Hb_005276_090 Hb_001998_180 Hb_001998_180 Hb_080952_060--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_080952_060--Hb_003776_050 Hb_119044_040 Hb_119044_040 Hb_080952_060--Hb_119044_040 Hb_000085_360 Hb_000085_360 Hb_080952_060--Hb_000085_360 Hb_001279_110 Hb_001279_110 Hb_080952_060--Hb_001279_110 Hb_000060_030 Hb_000060_030 Hb_080952_060--Hb_000060_030 Hb_000856_390 Hb_000856_390 Hb_001307_150--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_001307_150--Hb_000480_060 Hb_001307_150--Hb_016898_020 Hb_001307_150--Hb_001699_270 Hb_003847_060 Hb_003847_060 Hb_001307_150--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001307_150--Hb_000345_450 Hb_001699_270--Hb_000480_060 Hb_001699_270--Hb_001950_090 Hb_001699_270--Hb_003847_060 Hb_001699_270--Hb_000345_450 Hb_005276_090--Hb_000085_360 Hb_005276_090--Hb_000480_060 Hb_003106_090 Hb_003106_090 Hb_005276_090--Hb_003106_090 Hb_005276_090--Hb_119044_040 Hb_002374_090 Hb_002374_090 Hb_005276_090--Hb_002374_090 Hb_005276_090--Hb_003776_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0412793 0.0571818 5.65147 2.80808 0 0.00741752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0536576 0.0140741 0.160945 0.620417 0.299085

CAGE analysis