Hb_001689_020

Information

Type -
Description -
Location Contig1689: 13454-20786
Sequence    

Annotation

kegg
ID rcu:RCOM_0606150
description ankyrin-kinase, putative (EC:2.7.11.25)
nr
ID KDP35126.1
description hypothetical protein JCGZ_10660 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067KFW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10660 PE=4 SV=1
Gene Ontology
ID GO:0004672
description dual specificity protein kinase shkc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15653: 12962-20723 , PASA_asmbl_15654: 12962-18439 , PASA_asmbl_15656: 13000-20791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001689_020 0.0 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
2 Hb_002671_100 0.0753063827 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
3 Hb_000424_230 0.0814426235 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
4 Hb_005016_170 0.0846739975 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000123_090 0.0919775684 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
6 Hb_001341_120 0.0938470608 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
7 Hb_028390_010 0.095420896 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
8 Hb_000933_090 0.0954257384 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
9 Hb_007044_080 0.0966037329 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
10 Hb_001369_180 0.0976719898 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
11 Hb_010381_120 0.0996180765 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
12 Hb_030131_040 0.1001543051 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
13 Hb_000982_160 0.1008776519 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
14 Hb_000364_060 0.1025772763 - - JHL03K20.4 [Jatropha curcas]
15 Hb_001863_110 0.1033327774 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_004837_190 0.1033722482 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
17 Hb_003656_130 0.1035797094 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
18 Hb_015763_030 0.1041274072 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003502_080 0.1044419447 - - vacuolar protein sorting, putative [Ricinus communis]
20 Hb_007594_130 0.1049577767 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001689_020 Hb_001689_020 Hb_002671_100 Hb_002671_100 Hb_001689_020--Hb_002671_100 Hb_000424_230 Hb_000424_230 Hb_001689_020--Hb_000424_230 Hb_005016_170 Hb_005016_170 Hb_001689_020--Hb_005016_170 Hb_000123_090 Hb_000123_090 Hb_001689_020--Hb_000123_090 Hb_001341_120 Hb_001341_120 Hb_001689_020--Hb_001341_120 Hb_028390_010 Hb_028390_010 Hb_001689_020--Hb_028390_010 Hb_007594_130 Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_040262_010 Hb_040262_010 Hb_002671_100--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170 Hb_005368_010 Hb_005368_010 Hb_000424_230--Hb_005368_010 Hb_015763_030 Hb_015763_030 Hb_000424_230--Hb_015763_030 Hb_002942_080 Hb_002942_080 Hb_000424_230--Hb_002942_080 Hb_007668_040 Hb_007668_040 Hb_000424_230--Hb_007668_040 Hb_001279_330 Hb_001279_330 Hb_000424_230--Hb_001279_330 Hb_001158_220 Hb_001158_220 Hb_005016_170--Hb_001158_220 Hb_000465_430 Hb_000465_430 Hb_005016_170--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_005016_170--Hb_003502_080 Hb_005016_170--Hb_002671_100 Hb_000956_030 Hb_000956_030 Hb_005016_170--Hb_000956_030 Hb_010691_060 Hb_010691_060 Hb_005016_170--Hb_010691_060 Hb_008864_110 Hb_008864_110 Hb_000123_090--Hb_008864_110 Hb_000933_020 Hb_000933_020 Hb_000123_090--Hb_000933_020 Hb_003605_130 Hb_003605_130 Hb_000123_090--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_000123_090--Hb_002400_470 Hb_001195_560 Hb_001195_560 Hb_000123_090--Hb_001195_560 Hb_001047_030 Hb_001047_030 Hb_000123_090--Hb_001047_030 Hb_030131_040 Hb_030131_040 Hb_001341_120--Hb_030131_040 Hb_000076_270 Hb_000076_270 Hb_001341_120--Hb_000076_270 Hb_002273_130 Hb_002273_130 Hb_001341_120--Hb_002273_130 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_000913_050 Hb_000913_050 Hb_001341_120--Hb_000913_050 Hb_007044_080 Hb_007044_080 Hb_028390_010--Hb_007044_080 Hb_000982_160 Hb_000982_160 Hb_028390_010--Hb_000982_160 Hb_002527_030 Hb_002527_030 Hb_028390_010--Hb_002527_030 Hb_000933_090 Hb_000933_090 Hb_028390_010--Hb_000933_090 Hb_000645_050 Hb_000645_050 Hb_028390_010--Hb_000645_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4519 8.08085 12.5229 23.4389 38.881 37.5722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6633 15.3737 11.3393 12.004 10.99

CAGE analysis