Hb_001689_060

Information

Type -
Description -
Location Contig1689: 121860-124049
Sequence    

Annotation

kegg
ID brp:103846154
description uncharacterized LOC103846154
nr
ID XP_009121309.1
description PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
swissprot
ID -
description -
trembl
ID F4NCG8
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001689_060 0.0 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
2 Hb_000733_140 0.0023723969 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
3 Hb_002918_100 0.0039938046 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
4 Hb_000032_110 0.0041128128 - - nadhp hc toxin reductase, putative [Ricinus communis]
5 Hb_001343_070 0.0058855354 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
6 Hb_023930_010 0.0059618371 - - hypothetical protein RCOM_0641040 [Ricinus communis]
7 Hb_002909_030 0.0060675525 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
8 Hb_184500_020 0.0069483365 - - -
9 Hb_053709_020 0.007050169 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_000039_130 0.0090100085 - - -
11 Hb_001545_090 0.01072392 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
12 Hb_000494_140 0.011126718 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
13 Hb_000125_050 0.0126849754 - - -
14 Hb_000235_020 0.0146836601 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000295_150 0.0172051181 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_001973_020 0.0173999041 - - -
17 Hb_006277_040 0.0179561544 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
18 Hb_007040_020 0.0180065301 - - -
19 Hb_003914_040 0.0180140863 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
20 Hb_001660_110 0.0181798343 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001689_060 Hb_001689_060 Hb_000733_140 Hb_000733_140 Hb_001689_060--Hb_000733_140 Hb_002918_100 Hb_002918_100 Hb_001689_060--Hb_002918_100 Hb_000032_110 Hb_000032_110 Hb_001689_060--Hb_000032_110 Hb_001343_070 Hb_001343_070 Hb_001689_060--Hb_001343_070 Hb_023930_010 Hb_023930_010 Hb_001689_060--Hb_023930_010 Hb_002909_030 Hb_002909_030 Hb_001689_060--Hb_002909_030 Hb_000733_140--Hb_001343_070 Hb_000733_140--Hb_002909_030 Hb_000733_140--Hb_002918_100 Hb_000733_140--Hb_000032_110 Hb_000733_140--Hb_023930_010 Hb_002918_100--Hb_000032_110 Hb_002918_100--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_002918_100--Hb_184500_020 Hb_053709_020 Hb_053709_020 Hb_002918_100--Hb_053709_020 Hb_000039_130 Hb_000039_130 Hb_002918_100--Hb_000039_130 Hb_000032_110--Hb_023930_010 Hb_000032_110--Hb_184500_020 Hb_000032_110--Hb_053709_020 Hb_000032_110--Hb_000039_130 Hb_001343_070--Hb_002909_030 Hb_001545_090 Hb_001545_090 Hb_001343_070--Hb_001545_090 Hb_000235_020 Hb_000235_020 Hb_001343_070--Hb_000235_020 Hb_001343_070--Hb_002918_100 Hb_023930_010--Hb_184500_020 Hb_023930_010--Hb_053709_020 Hb_023930_010--Hb_000039_130 Hb_000494_140 Hb_000494_140 Hb_023930_010--Hb_000494_140 Hb_002909_030--Hb_001545_090 Hb_002909_030--Hb_000235_020 Hb_002909_030--Hb_002918_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0680371 0.17128 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis