Hb_001691_050

Information

Type -
Description -
Location Contig1691: 104490-106170
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_050 0.0 - - -
2 Hb_073212_010 0.1579801227 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
3 Hb_002493_030 0.173565801 - - -
4 Hb_088542_010 0.1795871697 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
5 Hb_043655_010 0.1798904351 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
6 Hb_007634_020 0.1845414376 - - -
7 Hb_002232_290 0.1874969641 - - -
8 Hb_031862_170 0.1901487233 - - immunophilin, putative [Ricinus communis]
9 Hb_000028_630 0.1966659238 - - PIN-like protein, partial [Selaginella apoda]
10 Hb_000590_080 0.1978625294 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
11 Hb_000733_040 0.2021244721 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
12 Hb_011639_070 0.2069699737 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
13 Hb_002026_230 0.2082457406 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
14 Hb_003534_040 0.2085371965 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
15 Hb_129067_010 0.2098059243 - - Cytochrome P450 superfamily protein [Theobroma cacao]
16 Hb_004007_150 0.2146390176 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
17 Hb_000815_100 0.2147697955 - - -
18 Hb_000094_390 0.2149714347 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
19 Hb_040506_010 0.2230799334 - - protein binding protein, putative [Ricinus communis]
20 Hb_000836_050 0.2234485468 - - -

Gene co-expression network

sample Hb_001691_050 Hb_001691_050 Hb_073212_010 Hb_073212_010 Hb_001691_050--Hb_073212_010 Hb_002493_030 Hb_002493_030 Hb_001691_050--Hb_002493_030 Hb_088542_010 Hb_088542_010 Hb_001691_050--Hb_088542_010 Hb_043655_010 Hb_043655_010 Hb_001691_050--Hb_043655_010 Hb_007634_020 Hb_007634_020 Hb_001691_050--Hb_007634_020 Hb_002232_290 Hb_002232_290 Hb_001691_050--Hb_002232_290 Hb_073212_010--Hb_088542_010 Hb_004007_150 Hb_004007_150 Hb_073212_010--Hb_004007_150 Hb_000605_010 Hb_000605_010 Hb_073212_010--Hb_000605_010 Hb_012384_050 Hb_012384_050 Hb_073212_010--Hb_012384_050 Hb_001632_010 Hb_001632_010 Hb_073212_010--Hb_001632_010 Hb_171108_010 Hb_171108_010 Hb_002493_030--Hb_171108_010 Hb_002493_030--Hb_007634_020 Hb_000905_070 Hb_000905_070 Hb_002493_030--Hb_000905_070 Hb_002493_030--Hb_004007_150 Hb_002493_030--Hb_002232_290 Hb_088542_010--Hb_001632_010 Hb_001677_050 Hb_001677_050 Hb_088542_010--Hb_001677_050 Hb_129067_010 Hb_129067_010 Hb_088542_010--Hb_129067_010 Hb_088542_010--Hb_000605_010 Hb_000733_040 Hb_000733_040 Hb_088542_010--Hb_000733_040 Hb_000836_050 Hb_000836_050 Hb_043655_010--Hb_000836_050 Hb_043655_010--Hb_002232_290 Hb_002026_230 Hb_002026_230 Hb_043655_010--Hb_002026_230 Hb_000590_080 Hb_000590_080 Hb_043655_010--Hb_000590_080 Hb_029510_010 Hb_029510_010 Hb_043655_010--Hb_029510_010 Hb_007634_020--Hb_002026_230 Hb_000525_040 Hb_000525_040 Hb_007634_020--Hb_000525_040 Hb_000156_030 Hb_000156_030 Hb_007634_020--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_007634_020--Hb_005568_070 Hb_156144_020 Hb_156144_020 Hb_007634_020--Hb_156144_020 Hb_001892_160 Hb_001892_160 Hb_007634_020--Hb_001892_160 Hb_138600_010 Hb_138600_010 Hb_002232_290--Hb_138600_010 Hb_031862_170 Hb_031862_170 Hb_002232_290--Hb_031862_170 Hb_002232_290--Hb_005568_070 Hb_008147_030 Hb_008147_030 Hb_002232_290--Hb_008147_030 Hb_002232_290--Hb_029510_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.6259 4.00606 1.90471 0.176161 40.2406 16.6233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.642064 0.63041 7.5078 5.62052 0.459343

CAGE analysis