Hb_001691_060

Information

Type -
Description -
Location Contig1691: 106181-108039
Sequence    

Annotation

kegg
ID rcu:RCOM_0937080
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_002519070.1
description lipoxygenase, putative [Ricinus communis]
swissprot
ID Q9LNR3
description Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1
trembl
ID B9RZA1
description Lipoxygenase OS=Ricinus communis GN=RCOM_0937080 PE=3 SV=1
Gene Ontology
ID GO:0005515
description linoleate 13s-lipoxygenase 3- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_060 0.0 - - lipoxygenase, putative [Ricinus communis]
2 Hb_011145_020 0.0757126826 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
3 Hb_000005_350 0.0869552097 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
4 Hb_000075_030 0.088081599 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
5 Hb_000917_330 0.0980576088 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
6 Hb_001922_010 0.1015041206 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
7 Hb_000589_100 0.1024210163 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_033363_080 0.1056712183 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
9 Hb_032631_080 0.1079714476 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
10 Hb_025469_040 0.1128469017 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
11 Hb_001005_210 0.1141102627 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
12 Hb_001279_220 0.1155979851 - - protein binding protein, putative [Ricinus communis]
13 Hb_000625_130 0.115773279 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
14 Hb_116469_010 0.1159398948 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
15 Hb_004774_060 0.1162733664 - - -
16 Hb_010334_040 0.1172316952 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
17 Hb_028927_010 0.1174156327 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_001454_300 0.1204095725 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_148914_010 0.1220513589 - - glutathione s-transferase, putative [Ricinus communis]
20 Hb_131864_020 0.1228154414 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]

Gene co-expression network

sample Hb_001691_060 Hb_001691_060 Hb_011145_020 Hb_011145_020 Hb_001691_060--Hb_011145_020 Hb_000005_350 Hb_000005_350 Hb_001691_060--Hb_000005_350 Hb_000075_030 Hb_000075_030 Hb_001691_060--Hb_000075_030 Hb_000917_330 Hb_000917_330 Hb_001691_060--Hb_000917_330 Hb_001922_010 Hb_001922_010 Hb_001691_060--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_001691_060--Hb_000589_100 Hb_033363_080 Hb_033363_080 Hb_011145_020--Hb_033363_080 Hb_164283_010 Hb_164283_010 Hb_011145_020--Hb_164283_010 Hb_002749_070 Hb_002749_070 Hb_011145_020--Hb_002749_070 Hb_004544_070 Hb_004544_070 Hb_011145_020--Hb_004544_070 Hb_018591_010 Hb_018591_010 Hb_011145_020--Hb_018591_010 Hb_011861_020 Hb_011861_020 Hb_000005_350--Hb_011861_020 Hb_010334_040 Hb_010334_040 Hb_000005_350--Hb_010334_040 Hb_000005_350--Hb_000589_100 Hb_000684_490 Hb_000684_490 Hb_000005_350--Hb_000684_490 Hb_116469_010 Hb_116469_010 Hb_000005_350--Hb_116469_010 Hb_001005_210 Hb_001005_210 Hb_000075_030--Hb_001005_210 Hb_032631_080 Hb_032631_080 Hb_000075_030--Hb_032631_080 Hb_002218_040 Hb_002218_040 Hb_000075_030--Hb_002218_040 Hb_000075_030--Hb_000917_330 Hb_000075_030--Hb_001922_010 Hb_000625_130 Hb_000625_130 Hb_000917_330--Hb_000625_130 Hb_001936_030 Hb_001936_030 Hb_000917_330--Hb_001936_030 Hb_003166_020 Hb_003166_020 Hb_000917_330--Hb_003166_020 Hb_025469_040 Hb_025469_040 Hb_000917_330--Hb_025469_040 Hb_001545_270 Hb_001545_270 Hb_001922_010--Hb_001545_270 Hb_008418_010 Hb_008418_010 Hb_001922_010--Hb_008418_010 Hb_000723_240 Hb_000723_240 Hb_001922_010--Hb_000723_240 Hb_001922_010--Hb_032631_080 Hb_001922_010--Hb_011145_020 Hb_000589_100--Hb_011861_020 Hb_000589_100--Hb_000723_240 Hb_028927_010 Hb_028927_010 Hb_000589_100--Hb_028927_010 Hb_000025_740 Hb_000025_740 Hb_000589_100--Hb_000025_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.107828 0.341155 0.22818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.7553 0.127141

CAGE analysis