Hb_001691_130

Information

Type -
Description -
Location Contig1691: 201674-203237
Sequence    

Annotation

kegg
ID pda:103697476
description uncharacterized LOC103697476
nr
ID XP_010243346.1
description PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104587431

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_130 0.0 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
2 Hb_002630_030 0.0262469612 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
3 Hb_004968_090 0.0335315316 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
4 Hb_005551_030 0.0367000053 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
5 Hb_005666_030 0.0388197052 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
6 Hb_001231_020 0.041460706 - - -
7 Hb_106274_010 0.0595351013 - - hypothetical protein VITISV_008825 [Vitis vinifera]
8 Hb_000367_150 0.0719349476 - - -
9 Hb_015824_020 0.100174702 - - -
10 Hb_023386_030 0.1042126459 - - -
11 Hb_007456_030 0.1059229478 - - -
12 Hb_011987_010 0.1139664361 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
13 Hb_000497_310 0.1205891914 - - conserved hypothetical protein [Ricinus communis]
14 Hb_019135_010 0.1253474077 - - -
15 Hb_005029_030 0.1299943663 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
16 Hb_014109_020 0.1308102067 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
17 Hb_105785_010 0.1313302634 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_002041_010 0.1381648814 - - -
19 Hb_007632_140 0.1405022806 - - -
20 Hb_000476_030 0.144425329 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]

Gene co-expression network

sample Hb_001691_130 Hb_001691_130 Hb_002630_030 Hb_002630_030 Hb_001691_130--Hb_002630_030 Hb_004968_090 Hb_004968_090 Hb_001691_130--Hb_004968_090 Hb_005551_030 Hb_005551_030 Hb_001691_130--Hb_005551_030 Hb_005666_030 Hb_005666_030 Hb_001691_130--Hb_005666_030 Hb_001231_020 Hb_001231_020 Hb_001691_130--Hb_001231_020 Hb_106274_010 Hb_106274_010 Hb_001691_130--Hb_106274_010 Hb_002630_030--Hb_004968_090 Hb_002630_030--Hb_005666_030 Hb_002630_030--Hb_005551_030 Hb_002630_030--Hb_001231_020 Hb_000367_150 Hb_000367_150 Hb_002630_030--Hb_000367_150 Hb_004968_090--Hb_005666_030 Hb_004968_090--Hb_005551_030 Hb_004968_090--Hb_001231_020 Hb_004968_090--Hb_106274_010 Hb_005551_030--Hb_001231_020 Hb_005551_030--Hb_005666_030 Hb_005551_030--Hb_106274_010 Hb_005666_030--Hb_001231_020 Hb_005666_030--Hb_106274_010 Hb_001231_020--Hb_106274_010 Hb_011987_010 Hb_011987_010 Hb_106274_010--Hb_011987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0642665 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0400303 0.499683

CAGE analysis