Hb_001691_140

Information

Type -
Description -
Location Contig1691: 211739-216074
Sequence    

Annotation

kegg
ID rcu:RCOM_0936860
description 50S ribosomal protein L21, mitochondrial precursor, putative
nr
ID ADR70863.1
description mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
swissprot
ID Q8L9A0
description 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1
trembl
ID I6LNS9
description Mitochondrial 50S ribosomal protein L21 OS=Hevea brasiliensis GN=mRPL21 PE=2 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15724: 211798-216033 , PASA_asmbl_15725: 214859-215043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_140 0.0 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
2 Hb_000099_150 0.0591455097 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
3 Hb_002078_140 0.0634056776 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
4 Hb_011671_100 0.0681550621 - - 60S ribosomal protein L15 [Populus trichocarpa]
5 Hb_000217_030 0.0710679019 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
6 Hb_001863_430 0.0741595018 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
7 Hb_029388_020 0.0745811387 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005365_030 0.0791669313 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
9 Hb_022425_040 0.0830484797 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
10 Hb_124953_020 0.0834789496 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
11 Hb_000136_260 0.0835170128 - - 40S ribosomal protein S5A [Hevea brasiliensis]
12 Hb_008554_060 0.0836689419 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
13 Hb_015279_010 0.0840216547 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
14 Hb_027472_040 0.0874412849 - - SKP1 [Hevea brasiliensis]
15 Hb_000331_470 0.088100003 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
16 Hb_003787_010 0.0894120909 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
17 Hb_001341_150 0.0900479769 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
18 Hb_000667_070 0.0907040495 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_000815_060 0.0913838314 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
20 Hb_001030_020 0.0917774448 - - Poly(A) polymerase alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_001691_140 Hb_001691_140 Hb_000099_150 Hb_000099_150 Hb_001691_140--Hb_000099_150 Hb_002078_140 Hb_002078_140 Hb_001691_140--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_000217_030 Hb_000217_030 Hb_001691_140--Hb_000217_030 Hb_001863_430 Hb_001863_430 Hb_001691_140--Hb_001863_430 Hb_029388_020 Hb_029388_020 Hb_001691_140--Hb_029388_020 Hb_000136_260 Hb_000136_260 Hb_000099_150--Hb_000136_260 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_000099_150--Hb_002078_140 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_002078_140--Hb_000136_260 Hb_001016_150 Hb_001016_150 Hb_002078_140--Hb_001016_150 Hb_002078_140--Hb_001863_430 Hb_003787_010 Hb_003787_010 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_015279_010 Hb_015279_010 Hb_011671_100--Hb_015279_010 Hb_004767_080 Hb_004767_080 Hb_011671_100--Hb_004767_080 Hb_000417_360 Hb_000417_360 Hb_011671_100--Hb_000417_360 Hb_000217_030--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_000217_030--Hb_004116_190 Hb_002995_020 Hb_002995_020 Hb_000217_030--Hb_002995_020 Hb_002518_080 Hb_002518_080 Hb_000217_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_000217_030--Hb_022425_040 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_001863_430--Hb_000327_230 Hb_000684_380 Hb_000684_380 Hb_029388_020--Hb_000684_380 Hb_003125_200 Hb_003125_200 Hb_029388_020--Hb_003125_200 Hb_005365_030 Hb_005365_030 Hb_029388_020--Hb_005365_030 Hb_029388_020--Hb_002995_020 Hb_027472_040 Hb_027472_040 Hb_029388_020--Hb_027472_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5398 14.5819 14.7885 13.7855 12.2096 10.1284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6846 38.5876 14.0836 17.8789 8.949

CAGE analysis