Hb_001691_170

Information

Type -
Description -
Location Contig1691: 241597-244111
Sequence    

Annotation

kegg
ID gmx:100811121
description callose synthase 12-like
nr
ID XP_006593079.1
description PREDICTED: callose synthase 12-like [Glycine max]
swissprot
ID Q9S9U0
description Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1
trembl
ID B9RZ95
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0936520 PE=4 SV=1
Gene Ontology
ID GO:0000148
description callose synthase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15731: 244927-248208 , PASA_asmbl_15732: 245038-248208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_170 0.0 - - PREDICTED: callose synthase 12-like [Glycine max]
2 Hb_007426_070 0.0995704114 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
3 Hb_168319_040 0.1015886265 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
4 Hb_000483_440 0.1082022157 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000081_110 0.1098636625 - - nitrate transporter, putative [Ricinus communis]
6 Hb_001517_060 0.1162001508 - - phosphoribulose kinase, putative [Ricinus communis]
7 Hb_000017_210 0.1183536218 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
8 Hb_004146_030 0.1197545119 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000482_030 0.1200803293 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
10 Hb_144045_010 0.1232587611 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
11 Hb_000011_440 0.1254264484 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
12 Hb_009093_020 0.1286631841 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
13 Hb_001584_050 0.1292437233 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_004407_030 0.1315404132 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
15 Hb_002005_050 0.1331979106 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_007253_030 0.1363817513 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
17 Hb_015824_010 0.1369801754 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
18 Hb_000694_080 0.1378494583 - - phosphoribulose kinase, putative [Ricinus communis]
19 Hb_003299_060 0.13876202 - - nitrate transporter, putative [Ricinus communis]
20 Hb_001579_050 0.1399281771 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001691_170 Hb_001691_170 Hb_007426_070 Hb_007426_070 Hb_001691_170--Hb_007426_070 Hb_168319_040 Hb_168319_040 Hb_001691_170--Hb_168319_040 Hb_000483_440 Hb_000483_440 Hb_001691_170--Hb_000483_440 Hb_000081_110 Hb_000081_110 Hb_001691_170--Hb_000081_110 Hb_001517_060 Hb_001517_060 Hb_001691_170--Hb_001517_060 Hb_000017_210 Hb_000017_210 Hb_001691_170--Hb_000017_210 Hb_007426_070--Hb_000017_210 Hb_007426_070--Hb_000483_440 Hb_004146_030 Hb_004146_030 Hb_007426_070--Hb_004146_030 Hb_000694_080 Hb_000694_080 Hb_007426_070--Hb_000694_080 Hb_000482_030 Hb_000482_030 Hb_007426_070--Hb_000482_030 Hb_007426_070--Hb_000081_110 Hb_000441_080 Hb_000441_080 Hb_168319_040--Hb_000441_080 Hb_077151_010 Hb_077151_010 Hb_168319_040--Hb_077151_010 Hb_001579_050 Hb_001579_050 Hb_168319_040--Hb_001579_050 Hb_000858_050 Hb_000858_050 Hb_168319_040--Hb_000858_050 Hb_005678_030 Hb_005678_030 Hb_168319_040--Hb_005678_030 Hb_000483_440--Hb_000017_210 Hb_000483_440--Hb_000694_080 Hb_000483_440--Hb_000081_110 Hb_000483_440--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000483_440--Hb_005305_070 Hb_000081_110--Hb_001517_060 Hb_000139_030 Hb_000139_030 Hb_000081_110--Hb_000139_030 Hb_000081_110--Hb_001579_050 Hb_000081_110--Hb_000017_210 Hb_009093_020 Hb_009093_020 Hb_001517_060--Hb_009093_020 Hb_002289_070 Hb_002289_070 Hb_001517_060--Hb_002289_070 Hb_002534_090 Hb_002534_090 Hb_001517_060--Hb_002534_090 Hb_001517_060--Hb_001579_050 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_000009_470 Hb_000009_470 Hb_001517_060--Hb_000009_470 Hb_000017_210--Hb_000694_080 Hb_000017_210--Hb_000482_030 Hb_000017_210--Hb_004146_030 Hb_000017_210--Hb_005305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00918128 0.045505 0.153462 0.0400317 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.019574 0.486526

CAGE analysis