Hb_001691_180

Information

Type -
Description -
Location Contig1691: 244933-247820
Sequence    

Annotation

kegg
ID rcu:RCOM_0936490
description phosphoglycerate mutase, putative (EC:5.4.2.1)
nr
ID XP_002519062.1
description phosphoglycerate mutase, putative [Ricinus communis]
swissprot
ID Q9FNJ9
description Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana GN=At5g22620 PE=1 SV=1
trembl
ID B9RZ93
description Phosphoglycerate mutase, putative OS=Ricinus communis GN=RCOM_0936490 PE=4 SV=1
Gene Ontology
ID GO:0004619
description probable 2-carboxy-d-arabinitol-1-phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15731: 244927-248208 , PASA_asmbl_15732: 245038-248208
cDNA
(Sanger)
(ID:Location)		 036_P01.ab1: 246447-248208

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_180 0.0 - - phosphoglycerate mutase, putative [Ricinus communis]
2 Hb_000076_070 0.0787291718 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
3 Hb_001517_010 0.095452275 - - conserved hypothetical protein [Ricinus communis]
4 Hb_123689_010 0.0964766976 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
5 Hb_009771_080 0.0973089122 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_000107_540 0.0989761858 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
7 Hb_028960_010 0.0999444912 - - phosphoglycerate kinase, putative [Ricinus communis]
8 Hb_000679_320 0.1018766473 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
9 Hb_003171_040 0.103652045 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_002333_040 0.1102017864 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
11 Hb_006472_040 0.1139828092 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
12 Hb_008948_130 0.117160559 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001195_290 0.1185004083 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
14 Hb_004162_250 0.1190253188 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
15 Hb_163950_040 0.1203219789 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
16 Hb_005348_120 0.121506834 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
17 Hb_000390_160 0.1254500848 - - PREDICTED: adenosine kinase [Jatropha curcas]
18 Hb_008112_020 0.12654839 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
19 Hb_009393_140 0.1287446603 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
20 Hb_029622_060 0.128754464 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001691_180 Hb_001691_180 Hb_000076_070 Hb_000076_070 Hb_001691_180--Hb_000076_070 Hb_001517_010 Hb_001517_010 Hb_001691_180--Hb_001517_010 Hb_123689_010 Hb_123689_010 Hb_001691_180--Hb_123689_010 Hb_009771_080 Hb_009771_080 Hb_001691_180--Hb_009771_080 Hb_000107_540 Hb_000107_540 Hb_001691_180--Hb_000107_540 Hb_028960_010 Hb_028960_010 Hb_001691_180--Hb_028960_010 Hb_000076_070--Hb_009771_080 Hb_000076_070--Hb_123689_010 Hb_029622_060 Hb_029622_060 Hb_000076_070--Hb_029622_060 Hb_007044_020 Hb_007044_020 Hb_000076_070--Hb_007044_020 Hb_000221_130 Hb_000221_130 Hb_000076_070--Hb_000221_130 Hb_001195_290 Hb_001195_290 Hb_001517_010--Hb_001195_290 Hb_001517_010--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_134949_010 Hb_134949_010 Hb_001517_010--Hb_134949_010 Hb_001584_210 Hb_001584_210 Hb_001517_010--Hb_001584_210 Hb_123689_010--Hb_029622_060 Hb_002534_090 Hb_002534_090 Hb_123689_010--Hb_002534_090 Hb_000009_470 Hb_000009_470 Hb_123689_010--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_123689_010--Hb_011344_030 Hb_123689_010--Hb_007044_020 Hb_001269_480 Hb_001269_480 Hb_123689_010--Hb_001269_480 Hb_163950_040 Hb_163950_040 Hb_009771_080--Hb_163950_040 Hb_009771_080--Hb_123689_010 Hb_000679_320 Hb_000679_320 Hb_009771_080--Hb_000679_320 Hb_009771_080--Hb_001517_010 Hb_002333_040 Hb_002333_040 Hb_000107_540--Hb_002333_040 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_005348_120 Hb_005348_120 Hb_000107_540--Hb_005348_120 Hb_000107_540--Hb_000679_320 Hb_004162_250 Hb_004162_250 Hb_000107_540--Hb_004162_250 Hb_012940_020 Hb_012940_020 Hb_028960_010--Hb_012940_020 Hb_156850_020 Hb_156850_020 Hb_028960_010--Hb_156850_020 Hb_068804_110 Hb_068804_110 Hb_028960_010--Hb_068804_110 Hb_000359_070 Hb_000359_070 Hb_028960_010--Hb_000359_070 Hb_106552_030 Hb_106552_030 Hb_028960_010--Hb_106552_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0218184 0.288172 5.56131 3.5844 0.0175482 0.113517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.399726 0.251547 0.23412 0.868916 19.2751

CAGE analysis