Hb_001691_210

Information

Type transcription factor
Description TF Family: C2C2-LSD
Location Contig1691: 271225-275068
Sequence    

Annotation

kegg
ID vvi:100265410
description protein LOL2
nr
ID KDP20965.1
description hypothetical protein JCGZ_21436 [Jatropha curcas]
swissprot
ID Q704V3
description Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1
trembl
ID A0A067JLS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21436 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15736: 271306-274859
cDNA
(Sanger)
(ID:Location)		 036_O04.ab1: 271339-274693 , 046_E04.ab1: 271306-274685 , 048_B01.ab1: 271306-274675

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_210 0.0 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
2 Hb_000089_160 0.0540391557 - - 60S ribosomal protein L5B [Hevea brasiliensis]
3 Hb_001718_100 0.0668610675 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
4 Hb_005997_010 0.0700928162 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
5 Hb_003175_040 0.0701658648 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
6 Hb_003020_230 0.071778278 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
7 Hb_000205_270 0.0720988223 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
8 Hb_000979_230 0.0729228915 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
9 Hb_000086_570 0.0740285377 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
10 Hb_000444_050 0.0750619623 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
11 Hb_071736_020 0.0759372653 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
12 Hb_002078_450 0.0778125775 - - nuclear transport factor, putative [Ricinus communis]
13 Hb_000671_150 0.0799401643 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
14 Hb_000087_020 0.0805693122 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
15 Hb_000030_100 0.080861293 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
16 Hb_021650_030 0.0827222143 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
17 Hb_001427_120 0.0827872858 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
18 Hb_004837_140 0.0829446199 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
19 Hb_001881_020 0.0840804639 - - clathrin binding protein, putative [Ricinus communis]
20 Hb_000239_010 0.0880330245 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001691_210 Hb_001691_210 Hb_000089_160 Hb_000089_160 Hb_001691_210--Hb_000089_160 Hb_001718_100 Hb_001718_100 Hb_001691_210--Hb_001718_100 Hb_005997_010 Hb_005997_010 Hb_001691_210--Hb_005997_010 Hb_003175_040 Hb_003175_040 Hb_001691_210--Hb_003175_040 Hb_003020_230 Hb_003020_230 Hb_001691_210--Hb_003020_230 Hb_000205_270 Hb_000205_270 Hb_001691_210--Hb_000205_270 Hb_000089_160--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_000089_160--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_000089_160--Hb_001427_120 Hb_000030_100 Hb_000030_100 Hb_000089_160--Hb_000030_100 Hb_000089_160--Hb_003175_040 Hb_001718_100--Hb_001427_120 Hb_071736_020 Hb_071736_020 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_001718_100--Hb_000086_570 Hb_005997_010--Hb_003020_230 Hb_004837_140 Hb_004837_140 Hb_005997_010--Hb_004837_140 Hb_009954_040 Hb_009954_040 Hb_005997_010--Hb_009954_040 Hb_000087_020 Hb_000087_020 Hb_005997_010--Hb_000087_020 Hb_001824_070 Hb_001824_070 Hb_005997_010--Hb_001824_070 Hb_000371_080 Hb_000371_080 Hb_005997_010--Hb_000371_080 Hb_004108_230 Hb_004108_230 Hb_003175_040--Hb_004108_230 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_002918_200 Hb_002918_200 Hb_003175_040--Hb_002918_200 Hb_003175_040--Hb_004837_140 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_003020_230--Hb_009954_040 Hb_003020_230--Hb_000371_080 Hb_000613_140 Hb_000613_140 Hb_003020_230--Hb_000613_140 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_003020_230--Hb_001824_070 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1557 3.99083 4.04057 8.63407 14.2143 24.4711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.3574 30.8885 29.8371 14.7711 5.29078

CAGE analysis