Hb_001693_020

Information

Type -
Description -
Location Contig1693: 14922-26717
Sequence    

Annotation

kegg
ID rcu:RCOM_0354360
description zinc finger protein, putative
nr
ID XP_002533921.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FLN0
description GDSL esterase/lipase 1 OS=Arabidopsis thaliana GN=GLIP1 PE=1 SV=1
trembl
ID B9T6Q2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0354360 PE=4 SV=1
Gene Ontology
ID GO:0016788
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15750: 25319-26652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001693_020 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001838_050 0.104894104 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
3 Hb_002553_120 0.111849341 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
4 Hb_161393_010 0.1132227414 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_005653_020 0.119770701 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
6 Hb_002081_040 0.1228140463 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
7 Hb_006446_060 0.1237667402 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
8 Hb_004574_010 0.1241410284 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
9 Hb_000237_150 0.1283154558 - - Epoxide hydrolase 2 [Morus notabilis]
10 Hb_000616_050 0.1293956832 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
11 Hb_002671_110 0.1313349732 - - PREDICTED: remorin-like [Jatropha curcas]
12 Hb_019229_020 0.1355585467 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_041769_010 0.1357570796 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_005228_170 0.136526321 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_001621_140 0.1375008678 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
16 Hb_003031_030 0.1380348631 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
17 Hb_002007_230 0.1395272036 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
18 Hb_000101_050 0.1409356509 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_007875_070 0.1440805836 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
20 Hb_001405_100 0.1451098063 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001693_020 Hb_001693_020 Hb_001838_050 Hb_001838_050 Hb_001693_020--Hb_001838_050 Hb_002553_120 Hb_002553_120 Hb_001693_020--Hb_002553_120 Hb_161393_010 Hb_161393_010 Hb_001693_020--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_001693_020--Hb_005653_020 Hb_002081_040 Hb_002081_040 Hb_001693_020--Hb_002081_040 Hb_006446_060 Hb_006446_060 Hb_001693_020--Hb_006446_060 Hb_004574_010 Hb_004574_010 Hb_001838_050--Hb_004574_010 Hb_003031_030 Hb_003031_030 Hb_001838_050--Hb_003031_030 Hb_000237_150 Hb_000237_150 Hb_001838_050--Hb_000237_150 Hb_088916_010 Hb_088916_010 Hb_001838_050--Hb_088916_010 Hb_000616_050 Hb_000616_050 Hb_001838_050--Hb_000616_050 Hb_002553_120--Hb_006446_060 Hb_002553_120--Hb_161393_010 Hb_002553_120--Hb_005653_020 Hb_000684_020 Hb_000684_020 Hb_002553_120--Hb_000684_020 Hb_002553_120--Hb_002081_040 Hb_001621_140 Hb_001621_140 Hb_002553_120--Hb_001621_140 Hb_161393_010--Hb_002081_040 Hb_161393_010--Hb_001621_140 Hb_041769_010 Hb_041769_010 Hb_161393_010--Hb_041769_010 Hb_161393_010--Hb_006446_060 Hb_161393_010--Hb_005653_020 Hb_005653_020--Hb_001621_140 Hb_005653_020--Hb_006446_060 Hb_005653_020--Hb_002081_040 Hb_005653_020--Hb_041769_010 Hb_005228_170 Hb_005228_170 Hb_002081_040--Hb_005228_170 Hb_002081_040--Hb_001621_140 Hb_005218_070 Hb_005218_070 Hb_002081_040--Hb_005218_070 Hb_000951_030 Hb_000951_030 Hb_002081_040--Hb_000951_030 Hb_000101_050 Hb_000101_050 Hb_006446_060--Hb_000101_050 Hb_006446_060--Hb_041769_010 Hb_006446_060--Hb_001621_140 Hb_005993_070 Hb_005993_070 Hb_006446_060--Hb_005993_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.744074 0.048789 0.185101 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0493131 1.7533 0.0549914

CAGE analysis