Hb_001696_010

Information

Type -
Description -
Location Contig1696: 5723-15029
Sequence    

Annotation

kegg
ID rcu:RCOM_0706320
description serine/threonine-protein kinase, putative (EC:2.7.11.13)
nr
ID XP_012077241.1
description PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
swissprot
ID Q6TGC6
description Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1
trembl
ID A0A067KD52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07638 PE=4 SV=1
Gene Ontology
ID GO:0004697
description serine threonine-protein kinase 38-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15765: 5839-14892 , PASA_asmbl_15766: 11480-12116 , PASA_asmbl_15768: 7575-7778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001696_010 0.0 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
2 Hb_029510_050 0.073045104 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
3 Hb_004225_050 0.0769587379 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
4 Hb_002740_180 0.0788431749 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002809_050 0.0811276833 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
6 Hb_028089_010 0.0846611906 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
7 Hb_002685_210 0.0856495736 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
8 Hb_001912_110 0.0857553075 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_001243_040 0.0867640958 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
10 Hb_006915_030 0.0877697187 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
11 Hb_006649_050 0.0886086062 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
12 Hb_000028_480 0.089586745 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
13 Hb_000260_010 0.0911533893 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
14 Hb_002830_030 0.0916152122 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
15 Hb_009767_110 0.0916423436 - - -
16 Hb_002518_260 0.0916443261 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
17 Hb_000025_640 0.0933723565 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
18 Hb_007479_040 0.0943161738 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005463_100 0.0943541703 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
20 Hb_000003_250 0.0948794618 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001696_010 Hb_001696_010 Hb_029510_050 Hb_029510_050 Hb_001696_010--Hb_029510_050 Hb_004225_050 Hb_004225_050 Hb_001696_010--Hb_004225_050 Hb_002740_180 Hb_002740_180 Hb_001696_010--Hb_002740_180 Hb_002809_050 Hb_002809_050 Hb_001696_010--Hb_002809_050 Hb_028089_010 Hb_028089_010 Hb_001696_010--Hb_028089_010 Hb_002685_210 Hb_002685_210 Hb_001696_010--Hb_002685_210 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_029510_050--Hb_002685_210 Hb_028912_050 Hb_028912_050 Hb_004225_050--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_004225_050--Hb_188063_020 Hb_006649_050 Hb_006649_050 Hb_004225_050--Hb_006649_050 Hb_000028_480 Hb_000028_480 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_005054_100 Hb_005054_100 Hb_002740_180--Hb_005054_100 Hb_000185_040 Hb_000185_040 Hb_002740_180--Hb_000185_040 Hb_054865_150 Hb_054865_150 Hb_002740_180--Hb_054865_150 Hb_002740_180--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_002740_180--Hb_000318_290 Hb_002740_180--Hb_000028_480 Hb_022115_020 Hb_022115_020 Hb_002809_050--Hb_022115_020 Hb_000260_010 Hb_000260_010 Hb_002809_050--Hb_000260_010 Hb_000213_010 Hb_000213_010 Hb_002809_050--Hb_000213_010 Hb_006634_070 Hb_006634_070 Hb_002809_050--Hb_006634_070 Hb_003177_030 Hb_003177_030 Hb_002809_050--Hb_003177_030 Hb_006938_080 Hb_006938_080 Hb_002809_050--Hb_006938_080 Hb_002835_370 Hb_002835_370 Hb_028089_010--Hb_002835_370 Hb_009548_020 Hb_009548_020 Hb_028089_010--Hb_009548_020 Hb_001141_020 Hb_001141_020 Hb_028089_010--Hb_001141_020 Hb_004619_030 Hb_004619_030 Hb_028089_010--Hb_004619_030 Hb_000032_100 Hb_000032_100 Hb_028089_010--Hb_000032_100 Hb_028089_010--Hb_188063_020 Hb_000172_290 Hb_000172_290 Hb_002685_210--Hb_000172_290 Hb_002685_210--Hb_029879_070 Hb_005490_030 Hb_005490_030 Hb_002685_210--Hb_005490_030 Hb_002685_210--Hb_000254_090 Hb_000631_080 Hb_000631_080 Hb_002685_210--Hb_000631_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9724 14.5436 13.0317 18.1268 27.954 20.1445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7487 18.0232 33.4495 16.6632 23.358

CAGE analysis