Hb_001696_030

Information

Type -
Description -
Location Contig1696: 55455-56972
Sequence    

Annotation

kegg
ID rcu:RCOM_0431530
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_002529227.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q9FVS9
description Alkane hydroxylase MAH1 OS=Arabidopsis thaliana GN=CYP96A15 PE=2 SV=1
trembl
ID B9STA8
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0431530 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 86b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15770: 55339-57123
cDNA
(Sanger)
(ID:Location)		 024_G08.ab1: 56561-57118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001696_030 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_005167_040 0.0753071173 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
3 Hb_023988_020 0.0811083075 - - PREDICTED: transmembrane protein 19 [Prunus mume]
4 Hb_007766_010 0.1083711978 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
5 Hb_001205_090 0.1100149646 - - PREDICTED: random slug protein 5 [Jatropha curcas]
6 Hb_004659_120 0.1215585981 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
7 Hb_000376_110 0.123666395 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
8 Hb_000920_140 0.1254716779 - - annexin [Manihot esculenta]
9 Hb_004032_440 0.1256223682 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
10 Hb_010483_020 0.1275878663 - - latex allergen [Hevea brasiliensis]
11 Hb_000258_430 0.1346249776 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_001017_090 0.136256359 - - -
13 Hb_000184_040 0.138932929 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
14 Hb_000258_080 0.143963883 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
15 Hb_006070_010 0.1447408333 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
16 Hb_000481_020 0.1485763334 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
17 Hb_010174_130 0.1588470759 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
18 Hb_001047_010 0.1601841507 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002450_050 0.160353718 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
20 Hb_000082_080 0.1616832165 - - putative polyol transporter protein 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001696_030 Hb_001696_030 Hb_005167_040 Hb_005167_040 Hb_001696_030--Hb_005167_040 Hb_023988_020 Hb_023988_020 Hb_001696_030--Hb_023988_020 Hb_007766_010 Hb_007766_010 Hb_001696_030--Hb_007766_010 Hb_001205_090 Hb_001205_090 Hb_001696_030--Hb_001205_090 Hb_004659_120 Hb_004659_120 Hb_001696_030--Hb_004659_120 Hb_000376_110 Hb_000376_110 Hb_001696_030--Hb_000376_110 Hb_005167_040--Hb_023988_020 Hb_000258_080 Hb_000258_080 Hb_005167_040--Hb_000258_080 Hb_005167_040--Hb_007766_010 Hb_000031_030 Hb_000031_030 Hb_005167_040--Hb_000031_030 Hb_000082_080 Hb_000082_080 Hb_005167_040--Hb_000082_080 Hb_000920_140 Hb_000920_140 Hb_023988_020--Hb_000920_140 Hb_004032_440 Hb_004032_440 Hb_023988_020--Hb_004032_440 Hb_000184_040 Hb_000184_040 Hb_023988_020--Hb_000184_040 Hb_023988_020--Hb_000376_110 Hb_005271_170 Hb_005271_170 Hb_023988_020--Hb_005271_170 Hb_004724_040 Hb_004724_040 Hb_007766_010--Hb_004724_040 Hb_006070_010 Hb_006070_010 Hb_007766_010--Hb_006070_010 Hb_000481_020 Hb_000481_020 Hb_007766_010--Hb_000481_020 Hb_010483_020 Hb_010483_020 Hb_007766_010--Hb_010483_020 Hb_000258_430 Hb_000258_430 Hb_007766_010--Hb_000258_430 Hb_001205_090--Hb_004659_120 Hb_001205_090--Hb_010483_020 Hb_001205_090--Hb_023988_020 Hb_001017_090 Hb_001017_090 Hb_001205_090--Hb_001017_090 Hb_001205_090--Hb_007766_010 Hb_004659_120--Hb_000184_040 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_006831_010 Hb_006831_010 Hb_004659_120--Hb_006831_010 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_010174_120 Hb_010174_120 Hb_004659_120--Hb_010174_120 Hb_000376_110--Hb_000920_140 Hb_000376_110--Hb_004032_440 Hb_000641_030 Hb_000641_030 Hb_000376_110--Hb_000641_030 Hb_007810_040 Hb_007810_040 Hb_000376_110--Hb_007810_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
276.455 13.6203 4.07904 142.208 177.791 235.577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
253.235 98.8265 162.027 19.5078 6.99993

CAGE analysis