Hb_001699_010

Information

Type -
Description -
Location Contig1699: 18086-31899
Sequence    

Annotation

kegg
ID rcu:RCOM_0572770
description hypothetical protein
nr
ID AGC51775.1
description drought-inducible protein [Manihot esculenta]
swissprot
ID A0JNJ3
description Spartin OS=Bos taurus GN=SPG20 PE=2 SV=1
trembl
ID V9M4U9
description Drought-inducible protein OS=Manihot esculenta GN=ERD7 PE=2 SV=1
Gene Ontology
ID GO:0005737
description senescence dehydration-associated isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15778: 18241-32118 , PASA_asmbl_15781: 27439-27861 , PASA_asmbl_15782: 28360-28514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_010 0.0 - - drought-inducible protein [Manihot esculenta]
2 Hb_000089_210 0.0583115361 - - unknown [Medicago truncatula]
3 Hb_010287_020 0.0655867223 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
4 Hb_004994_240 0.066874715 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
5 Hb_000120_910 0.0688897094 - - plant ubiquilin, putative [Ricinus communis]
6 Hb_000120_030 0.0693353014 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
7 Hb_000110_350 0.0715316548 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
8 Hb_001300_010 0.0734286648 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
9 Hb_005288_140 0.0748770839 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
10 Hb_000476_060 0.0768595272 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
11 Hb_000085_170 0.0771405407 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
12 Hb_001257_030 0.0775337383 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
13 Hb_000179_190 0.0777692508 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
14 Hb_033152_090 0.0784464935 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
15 Hb_000445_060 0.0789443847 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
16 Hb_027654_020 0.0790728702 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
17 Hb_004517_020 0.0794426758 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
18 Hb_002232_480 0.0799631996 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
19 Hb_000529_060 0.0807156129 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
20 Hb_000258_420 0.080951527 - - sucrose transporter 2A [Hevea brasiliensis]

Gene co-expression network

sample Hb_001699_010 Hb_001699_010 Hb_000089_210 Hb_000089_210 Hb_001699_010--Hb_000089_210 Hb_010287_020 Hb_010287_020 Hb_001699_010--Hb_010287_020 Hb_004994_240 Hb_004994_240 Hb_001699_010--Hb_004994_240 Hb_000120_910 Hb_000120_910 Hb_001699_010--Hb_000120_910 Hb_000120_030 Hb_000120_030 Hb_001699_010--Hb_000120_030 Hb_000110_350 Hb_000110_350 Hb_001699_010--Hb_000110_350 Hb_000207_200 Hb_000207_200 Hb_000089_210--Hb_000207_200 Hb_002909_040 Hb_002909_040 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_001300_010 Hb_001300_010 Hb_004994_240--Hb_001300_010 Hb_002232_480 Hb_002232_480 Hb_004994_240--Hb_002232_480 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_004517_020 Hb_004517_020 Hb_000120_910--Hb_004517_020 Hb_000977_300 Hb_000977_300 Hb_000120_910--Hb_000977_300 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_001723_010 Hb_001723_010 Hb_000120_910--Hb_001723_010 Hb_000120_030--Hb_010287_020 Hb_000327_140 Hb_000327_140 Hb_000120_030--Hb_000327_140 Hb_000086_420 Hb_000086_420 Hb_000120_030--Hb_000086_420 Hb_000120_030--Hb_004994_240 Hb_000363_120 Hb_000363_120 Hb_000120_030--Hb_000363_120 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000110_350--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000110_350--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.601 31.8082 33.782 28.1966 15.7053 13.6289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.64977 12.5546 14.6788 16.603 19.7372

CAGE analysis