Hb_001699_030

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1699: 35991-43132
Sequence    

Annotation

kegg
ID rcu:RCOM_0572760
description histidine kinase 1 plant, putative (EC:2.7.13.3)
nr
ID XP_012066074.1
description PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SXL4
description Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2
trembl
ID B9SUH7
description Histidine kinase 1 plant, putative OS=Ricinus communis GN=RCOM_0572760 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15783: 36648-37249 , PASA_asmbl_15785: 37578-39374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_030 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
2 Hb_003175_090 0.1417805784 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
3 Hb_020301_010 0.1486356547 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001178_040 0.1503011797 desease resistance Gene Name: ABC_trans_N PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
5 Hb_002311_110 0.1533705449 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005588_130 0.1554439369 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004282_040 0.1563133986 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
8 Hb_002004_010 0.1598531139 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
9 Hb_000003_700 0.1602211768 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
10 Hb_002849_110 0.1608972027 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
11 Hb_009476_160 0.1626464586 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
12 Hb_000836_210 0.1628596264 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
13 Hb_000342_120 0.1659827881 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
14 Hb_013691_060 0.1719773247 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
15 Hb_001541_160 0.1734036361 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
16 Hb_000742_260 0.1742486292 - - hypothetical protein RCOM_1336320 [Ricinus communis]
17 Hb_005656_160 0.1747860161 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
18 Hb_034953_010 0.1767585254 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
19 Hb_003952_130 0.1768375446 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
20 Hb_093177_010 0.1784004367 - - Phosphoprotein phosphatase [Theobroma cacao]

Gene co-expression network

sample Hb_001699_030 Hb_001699_030 Hb_003175_090 Hb_003175_090 Hb_001699_030--Hb_003175_090 Hb_020301_010 Hb_020301_010 Hb_001699_030--Hb_020301_010 Hb_001178_040 Hb_001178_040 Hb_001699_030--Hb_001178_040 Hb_002311_110 Hb_002311_110 Hb_001699_030--Hb_002311_110 Hb_005588_130 Hb_005588_130 Hb_001699_030--Hb_005588_130 Hb_004282_040 Hb_004282_040 Hb_001699_030--Hb_004282_040 Hb_003175_090--Hb_005588_130 Hb_003175_090--Hb_001178_040 Hb_004648_020 Hb_004648_020 Hb_003175_090--Hb_004648_020 Hb_003175_090--Hb_020301_010 Hb_002374_550 Hb_002374_550 Hb_003175_090--Hb_002374_550 Hb_001295_050 Hb_001295_050 Hb_020301_010--Hb_001295_050 Hb_005643_080 Hb_005643_080 Hb_020301_010--Hb_005643_080 Hb_000172_070 Hb_000172_070 Hb_020301_010--Hb_000172_070 Hb_005396_030 Hb_005396_030 Hb_020301_010--Hb_005396_030 Hb_004586_230 Hb_004586_230 Hb_020301_010--Hb_004586_230 Hb_010267_030 Hb_010267_030 Hb_020301_010--Hb_010267_030 Hb_154538_010 Hb_154538_010 Hb_001178_040--Hb_154538_010 Hb_000836_210 Hb_000836_210 Hb_001178_040--Hb_000836_210 Hb_000342_140 Hb_000342_140 Hb_001178_040--Hb_000342_140 Hb_003637_020 Hb_003637_020 Hb_001178_040--Hb_003637_020 Hb_178658_010 Hb_178658_010 Hb_002311_110--Hb_178658_010 Hb_002311_110--Hb_000836_210 Hb_002004_010 Hb_002004_010 Hb_002311_110--Hb_002004_010 Hb_002849_110 Hb_002849_110 Hb_002311_110--Hb_002849_110 Hb_000666_120 Hb_000666_120 Hb_002311_110--Hb_000666_120 Hb_005656_160 Hb_005656_160 Hb_002311_110--Hb_005656_160 Hb_005588_130--Hb_000172_070 Hb_004730_010 Hb_004730_010 Hb_005588_130--Hb_004730_010 Hb_000342_120 Hb_000342_120 Hb_005588_130--Hb_000342_120 Hb_005588_130--Hb_020301_010 Hb_000116_290 Hb_000116_290 Hb_004282_040--Hb_000116_290 Hb_004282_040--Hb_002849_110 Hb_000742_260 Hb_000742_260 Hb_004282_040--Hb_000742_260 Hb_009476_160 Hb_009476_160 Hb_004282_040--Hb_009476_160 Hb_000976_340 Hb_000976_340 Hb_004282_040--Hb_000976_340 Hb_000692_230 Hb_000692_230 Hb_004282_040--Hb_000692_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0600528 3.80576 0.566369 2.98826 0.323044 0.408921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.034174 0.0448227 0.0516201 0.227288 0.979087

CAGE analysis