Hb_001699_040

Information

Type -
Description -
Location Contig1699: 45887-46728
Sequence    

Annotation

kegg
ID rcu:RCOM_0572740
description hypothetical protein
nr
ID XP_012075228.1
description PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LME1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11878 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15788: 45720-46753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_040 0.0 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
2 Hb_010180_020 0.0803006666 - - hypothetical protein glysoja_030394 [Glycine soja]
3 Hb_001936_080 0.0887240057 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
4 Hb_010180_010 0.0892184806 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
5 Hb_000457_110 0.0898099468 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
6 Hb_001998_230 0.0907972614 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
7 Hb_168054_010 0.0953280549 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
8 Hb_143398_010 0.0954010943 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
9 Hb_004306_020 0.0962639826 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
10 Hb_004545_060 0.0976161797 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
11 Hb_002207_110 0.0984144048 - - -
12 Hb_009694_010 0.0990284711 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001604_080 0.0991854008 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
14 Hb_003001_120 0.0995884924 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
15 Hb_000080_060 0.1014970346 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
16 Hb_002518_030 0.1024445821 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
17 Hb_001252_100 0.1027847975 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
18 Hb_000529_190 0.1037825881 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
19 Hb_004944_010 0.1038116879 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
20 Hb_078185_010 0.1040691258 - - -

Gene co-expression network

sample Hb_001699_040 Hb_001699_040 Hb_010180_020 Hb_010180_020 Hb_001699_040--Hb_010180_020 Hb_001936_080 Hb_001936_080 Hb_001699_040--Hb_001936_080 Hb_010180_010 Hb_010180_010 Hb_001699_040--Hb_010180_010 Hb_000457_110 Hb_000457_110 Hb_001699_040--Hb_000457_110 Hb_001998_230 Hb_001998_230 Hb_001699_040--Hb_001998_230 Hb_168054_010 Hb_168054_010 Hb_001699_040--Hb_168054_010 Hb_001604_080 Hb_001604_080 Hb_010180_020--Hb_001604_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_003001_120 Hb_003001_120 Hb_001936_080--Hb_003001_120 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_002495_040 Hb_002495_040 Hb_001936_080--Hb_002495_040 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_000465_430 Hb_000465_430 Hb_001936_080--Hb_000465_430 Hb_012092_010 Hb_012092_010 Hb_001936_080--Hb_012092_010 Hb_143398_010 Hb_143398_010 Hb_010180_010--Hb_143398_010 Hb_010180_010--Hb_001998_230 Hb_010180_010--Hb_004306_020 Hb_002890_140 Hb_002890_140 Hb_010180_010--Hb_002890_140 Hb_000329_030 Hb_000329_030 Hb_010180_010--Hb_000329_030 Hb_010180_010--Hb_010180_020 Hb_004944_010 Hb_004944_010 Hb_000457_110--Hb_004944_010 Hb_000457_110--Hb_000465_430 Hb_000457_110--Hb_001936_080 Hb_000349_060 Hb_000349_060 Hb_000457_110--Hb_000349_060 Hb_000465_040 Hb_000465_040 Hb_000457_110--Hb_000465_040 Hb_000457_110--Hb_012092_010 Hb_002112_040 Hb_002112_040 Hb_001998_230--Hb_002112_040 Hb_004072_020 Hb_004072_020 Hb_001998_230--Hb_004072_020 Hb_024714_100 Hb_024714_100 Hb_001998_230--Hb_024714_100 Hb_000363_500 Hb_000363_500 Hb_001998_230--Hb_000363_500 Hb_012799_160 Hb_012799_160 Hb_001998_230--Hb_012799_160 Hb_168054_010--Hb_010180_020 Hb_001369_660 Hb_001369_660 Hb_168054_010--Hb_001369_660 Hb_001314_100 Hb_001314_100 Hb_168054_010--Hb_001314_100 Hb_168054_010--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_168054_010--Hb_003687_110 Hb_165132_010 Hb_165132_010 Hb_168054_010--Hb_165132_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0242 4.40762 15.8688 21.5678 18.0182 33.7789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0608 32.4605 16.2087 7.6419 10.3583

CAGE analysis